Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1063 ATGTCTTCTCCGCCGCCGCCGCCGCCGTTAGATCAACAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGCAGCAGCCGCTGGACGAGGAGATGGAGGTTCCTCCCTCTGATGTTCCTGAAGGTCCTCAGCCTATGGATGCCCAACCAGAAACCACAAATTTGTTTGGTGCTCCGATAGTGGACGAGTCACCATCTGGGCGGTTCACATGGACCATCAGGAATTTTTCAAGGTCTACAAAAAAACTATATTCTGAAGATTTCTATGTTGGGGGCTACAGATGGCGGATACTTATATTTCCAAAGGGGAACAATGTTGATCAGTTGTCATTGTATCTAGATGCTACTGATTCAGCAACTTTGCCTTATGGATGGAGTAGATATGCACAGTTTAGCTTGACTGTTGTCAATCAAATTCGCCATAATTTCTCAATCAGAAAAGAAACACATCACCAATTCAATGCTCGTGAGGGTGATTGGGGTTTCACAAGTTTCATGCCTCTTGCTGAATTGTATGATCCCGGTAGAGGTTATATTGTGAATGATACATGCATAGTTGAGGCTGATGTTGCTGTACGCAAGGTTATTGATTACTGGTCACATGACTCTAAAAAGGAAACTGGTTATGTCGGACTAAAAAACCAAGGGGCGACATGTTACATGAATTCTCTCCTTCAGACATTGTATCACATTCCTTATTTTAGAAAGGCTGTGTACCATATGCCTACAACTGAGAATGATTTGCCATCGGGAAGCATTCCTTTGGCATTGCAAAGTTTATTCTACAAGCTGCAGTATTATGACAGTAGCGTAGCAACGAAAGAGTTAACAAAATCTTTTGGATGGGACACACAGGATTCATTCCTGCAGCATGACGTCCAAGAGCTTAATAGAGTTCTTTGTGAAAAGCTAGAAGACAAAATGAAGGGAACTGTTGTGGAAGGCACCATACAGAAGTTGTTTGAAGGCCACCATATGAACTATATTGAATGCATCAATGTGGACTATAAATCAACCAGAAAAGAATCATTTTATGATCTTCAGCTTGACGTCAAAGGATGTCGGGATGTGTATGATTCTTTTGACAAGTATGTTGAAGTGGAAAGACTTGAGGGTGATAACAAGTATCATGCTGAGCAGTACGGTTTGCAGGAGGCTAAGAAGGGTGTCTTGTTCATTGATTTCCCTCCTGTTCTTCAGCTTCAGTTAAAACGATTTGAATATGATTTCATGCGAGACACTATGGTAAAGATCAATGATCGCTATGAGTTCCCGTTAGAGCTAGATCTTGATAGGGGCAATGGCAAGTATCTATCTCCTGAAGCAGATAAAAGCATTCGCAACCTTTATGTACTTCACAGTGTTTTAGTTCACAGCGGTGGGGTTCATGGTGGACACTATTTTGCTTATATCAGGCCAACTCTATCAAATGAATGGTTTAAATTTGACGACGCACGAGTGACGAAAGAAGATGCAGATAGGGCCTTAGAAGAGCAGTATGGTGGTGAAGAAGAGTTACCTCATGCCAATCCCGGGTTCAACAACTCTCCCTTCAAATTTACAAAGTACTCAAATGCATATATGCTTGTTTATATACGTGCCAGTGACAAGGATAAGATAATTTGTAGTGTGAATGAGAAGGACATTGCCGAACACCTTAAAGCAAGATTGAAGAAAGAACAAGAAGAAAAAGAGCTGAAGAAGAAGGAGAAGGCAGAGGCTCACTTATATACCATCATAAAGGTTGCACGCGACGAAGATCTGTTTGAACAGATTGGAAAGGATATATTCTTTGATCTAGTGGATCATAACAAAGTGCGAAGTTTTCGTATCCAAAAACAAATGCCATTCTTGTGTTTTAAGGAAGAAGTTGCTAGAGAGTTCGGTATACCTGTCCAATATCAACGTTTTTGGGTGTGGGCAAAGCGCCAAAACCACACTTTCCGGCCAAATAGACCTCTGACACAGCTGGAAGAAGAACGACCAGTGGGACATTTACGGGAAGGTATAACTAAGGCAAATATTGCAGATCTGAAGTTATTTTTGGAAGTGAAAGTAGGGCAGGATCTACAGCCTATTCCCCCTCTCGAGAGGACAAAAGAAGATTTGTTACTGTTCTTTAAGCTTTATGACCCTTTGAATGAAACACTGCGGTACGTTGGGAGCTTTTATGTGAAAGCTAATGAGAAGCCTTTGGATATATTGACAAGATTAAATCAAATGGCTGACTTTGCTATTGATGAAGAAATTGACCTATTTGAGGAAATCAAATTTGAACCCCATGTCATGTGCGAACCTGTTGACAAGGGGTCCACATTCCGATTCAATCAGCTTGAGGATGGTGATATTATTTGCTACCAGAAGCCATCCAAAGTTGTAAGTGGTGAGCAATTTCGGTATCCTGATATTCCTTCCTTCTTGGAATATGTGCATAACCGTCAGGTTGTACGCTTCAGGTACTTGGAGAAACCAAAAGAGGACCATTTCAGTCTCGAGTTGTCAAGGATCAACACATATGATTATGTTGTTACAAGAGTTGCTCAACATCTTGGTTTGAATGATCCTTCTAAAATCAGACTCACATCTCATAACTGTTACTCCCAGCTACCTAAACCCCAGCCTATCAAGTACCGAGGAGTTGAACATTTATCTGACATGCTGGTTCACTACAATCAGACTTCTGATATACTATACTATGAAGTACTGGATATCCCTCTCCCAGAATTGCAATGCCTAAAAACACTTAAAATTGCTTTCCATCATGCTGCCAAGGATGAAGTGGCGATTTATACTACTAGATTACCGAGACAGAGTATTGTGGAAGATGTAATCAATGATCTTAAATCGAAGGTGCATTTATCTCATCCTGATGCAGATCTAAGATTGCTTGAGGTTTTCTATCACAAGATCTATAAGATTTTCTCTCTCGGTGAAAAGATTGAAAATATTAATGATCAATATTGGACGTTAAGAGCAGAGGAGATTCCTCAAGAGGAGAAAAATCTTGGCCCTGAAGATCGATTGATTCATGTTTATCATTTCATGAAAGACACTGCACACGATCAGCAAATTCAGAATTTCGGAGATCCTTTTTTCATGGTTATCCATGAGGGTGAGACATTGGCTGATGTCAAATTGCGAATACAGAAAAAGTTGAACGTTCCAGATGAAGAGTTTTCAAAGTGGAAGTTTGCATTTATTTCTCTTGGTCATCCTGAGTACCTACAAGATTCAGATATTGTTTCCGCCCAATTTCAGAGAAGAGATATATATGGTGCTTGGGAGCAATATCTTGGACTGGAACACACTGACAATGCTCCAAAAAGGTCCTACATAGTCAACCAGAACCGGCATGCATTTGATAAGCCAGTAAAAATCTACAACTAG 3384 0.4081 MSSPPPPPPLDQQQQQQQEEEEEQQPLDEEMEVPPSDVPEGPQPMDAQPETTNLFGAPIVDESPSGRFTWTIRNFSRSTKKLYSEDFYVGGYRWRILIFPKGNNVDQLSLYLDATDSATLPYGWSRYAQFSLTVVNQIRHNFSIRKETHHQFNAREGDWGFTSFMPLAELYDPGRGYIVNDTCIVEADVAVRKVIDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYYDSSVATKELTKSFGWDTQDSFLQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYDSFDKYVEVERLEGDNKYHAEQYGLQEAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDLDRGNGKYLSPEADKSIRNLYVLHSVLVHSGGVHGGHYFAYIRPTLSNEWFKFDDARVTKEDADRALEEQYGGEEELPHANPGFNNSPFKFTKYSNAYMLVYIRASDKDKIICSVNEKDIAEHLKARLKKEQEEKELKKKEKAEAHLYTIIKVARDEDLFEQIGKDIFFDLVDHNKVRSFRIQKQMPFLCFKEEVAREFGIPVQYQRFWVWAKRQNHTFRPNRPLTQLEEERPVGHLREGITKANIADLKLFLEVKVGQDLQPIPPLERTKEDLLLFFKLYDPLNETLRYVGSFYVKANEKPLDILTRLNQMADFAIDEEIDLFEEIKFEPHVMCEPVDKGSTFRFNQLEDGDIICYQKPSKVVSGEQFRYPDIPSFLEYVHNRQVVRFRYLEKPKEDHFSLELSRINTYDYVVTRVAQHLGLNDPSKIRLTSHNCYSQLPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQCLKTLKIAFHHAAKDEVAIYTTRLPRQSIVEDVINDLKSKVHLSHPDADLRLLEVFYHKIYKIFSLGEKIENINDQYWTLRAEEIPQEEKNLGPEDRLIHVYHFMKDTAHDQQIQNFGDPFFMVIHEGETLADVKLRIQKKLNVPDEEFSKWKFAFISLGHPEYLQDSDIVSAQFQRRDIYGAWEQYLGLEHTDNAPKRSYIVNQNRHAFDKPVKIYN* 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1063 1127 CDD peptidase_C19C 207 535 - -
Lja5g1063 1127 Gene3D Cysteine proteinases 205 534 - -
Lja5g1063 1127 Gene3D - 812 909 - -
Lja5g1063 1127 Coils Coil 542 573 - -
Lja5g1063 1127 MobiDBLite consensus disorder prediction 1 52 - -
Lja5g1063 1127 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 209 533 IPR028889 -
Lja5g1063 1127 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 71 1048 - -
Lja5g1063 1127 SMART math_3 67 170 IPR002083 GO:0005515
Lja5g1063 1127 Pfam MATH domain 72 190 IPR002083 GO:0005515
Lja5g1063 1127 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 71 1048 - -
Lja5g1063 1127 SUPERFAMILY Cysteine proteinases 204 559 IPR038765 -
Lja5g1063 1127 MobiDBLite consensus disorder prediction 16 35 - -
Lja5g1063 1127 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 62 204 IPR008974 GO:0005515
Lja5g1063 1127 CDD MATH 66 189 IPR002083 GO:0005515
Lja5g1063 1127 Pfam Ubiquitin carboxyl-terminal hydrolase 209 530 IPR001394 GO:0004843|GO:0016579
Lja5g1063 1127 Gene3D - 695 811 - -
Lja5g1063 1127 Pfam Ubiquitin-specific protease C-terminal 896 1105 IPR029346 -
Lja5g1063 1127 ProSiteProfiles MATH/TRAF domain profile. 65 189 IPR002083 GO:0005515
Lja5g1063 1127 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 210 225 IPR018200 GO:0004843|GO:0006511
Lja5g1063 1127 SUPERFAMILY TRAF domain-like 64 198 - -
Lja5g1063 1127 Coils Coil 10 30 - -
Lja5g1063 1127 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 449 466 IPR018200 GO:0004843|GO:0006511
Lja5g1063 1127 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 634 886 IPR024729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1063 Lja-Chr5 10730519 10752213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1063 316 498 Miscellaneous Gene Families AT2G24640 27.660 8.25e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1063 K11838 - jre:109019926 1864.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0594 1 5417342 5439401 Lja5g1063 5 10730519 10752213 ECH
Lja5g2364 5 43851336 43852986 Lja5g1063 5 10730519 10752213 ECH
Lja5g1063 5 10730519 10752213 Lja5g1063 5 10730519 10752213 ECH