Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2370 ATGGATAATCAACTCACAAGTGATAAAACGTATGAGAAATTCACATGGACGATCAAGAATTTCTCTAAATTGAAAACAAAGAAGCTGTACTCTGAGAATTTCGTCATCGGTGGCCATCCATGGCGGATTCTTATCTTTCCAAAGGGCAACAATACTAGCTACTTGTCAATTTATTTGGATGCTGGAGGGGATCTATCTAATTTGCCAAATGACTGGAGCAGAGTTGAAAAGTTCAAGCTGAGCCTTATTAATCAAGTTAATGGCAAAATGACAATAACTAAAGAATATGAACACCAGTTCAATGCAAGAGAGTCTGATTGGGGTAGCACGATGTTCATAACTTTACTTGAACTTTATGACCCTAGTAATGGCTTTATCGTGAATGATACTTGCATTTTTGAAGCTGAGATAGCTGTCACAAAGCCGAAACATGTGAATCAGCTCGCAGATCAAGTAGTTAATACCCCTAAGGTTAGTTCGGATCAGCCTATTGGGAATGTTTCTAATCCTTTACCTGAGGAATTCTCTGTTGCATCACATGGTGAGCTTGTGGATTTCAAGAGTTTTGGGAAAATAGAAACAACTTTTGTTCCACTCTTGGAGGAGGTGTGTTCATTGCATCCCTCACTAATTGACTGCCAACGGAAGAGAAGTCGCAAGTTCACAGAATGGGCCTTTACAGCTTTGGGTCGAGTTTTACATTTTCTTAAGACTAGAAAGATGAAAGATATGAATGAGGATGCTTGTAGTCATCTCCAGTTTCTATGGGAGGAACTTGAGACATGCAAATTTGATTTGACTTGGCTACAACCTCATATTCAATCTACATTGAGTAAGAAAAGTTCTATAGAGAAAGCTTTGAAACTGAAAACGATGAAGGAGAATGTGGATACTCTAGACATGGAAATCAAATTGCTGGTGGAGAAGCTAATTTCCGCAAAGGTAGATGTTGAAATAACAAAAAGAGATTTGGCAAAAGAAGGCTTTGAAGAGAAGGATTTGGATGTTGAACTAGGATATGGAGTACGTTAG 1032 0.3847 MDNQLTSDKTYEKFTWTIKNFSKLKTKKLYSENFVIGGHPWRILIFPKGNNTSYLSIYLDAGGDLSNLPNDWSRVEKFKLSLINQVNGKMTITKEYEHQFNARESDWGSTMFITLLELYDPSNGFIVNDTCIFEAEIAVTKPKHVNQLADQVVNTPKVSSDQPIGNVSNPLPEEFSVASHGELVDFKSFGKIETTFVPLLEEVCSLHPSLIDCQRKRSRKFTEWAFTALGRVLHFLKTRKMKDMNEDACSHLQFLWEELETCKFDLTWLQPHIQSTLSKKSSIEKALKLKTMKENVDTLDMEIKLLVEKLISAKVDVEITKRDLAKEGFEEKDLDVELGYGVR* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2370 343 ProSiteProfiles MATH/TRAF domain profile. 11 137 IPR002083 GO:0005515
Lja5g2370 343 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 326 - -
Lja5g2370 343 CDD MATH 13 137 IPR002083 GO:0005515
Lja5g2370 343 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 326 - -
Lja5g2370 343 SMART math_3 13 118 IPR002083 GO:0005515
Lja5g2370 343 Coils Coil 289 309 - -
Lja5g2370 343 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 7 159 IPR008974 GO:0005515
Lja5g2370 343 SUPERFAMILY TRAF domain-like 13 142 - -
Lja5g2370 343 Pfam MATH domain 18 138 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2370 Lja-Chr5 43979096 43980687 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2370 - - adu:107476101 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0594 1 5417342 5439401 Lja5g2370 5 43979096 43980687 PCT