Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2364 ATGATCAAGAGTCCAGAAGCAAGGGTTGATAAATTCACATGGAAGATTGAGAACTTCTCTAAATTGGACTCCAGAACTTCTCTGAATTTCAAGAAGCTGTTTTACTCTCAAAATTTCTTCCTATGTGGCCATCCATGGTGGATTTGTATCTATCCAATGGGGGAAAATGTGGACTACTTCAAAATATATTTGGATGTCGATAGTTTGCCTCGTGGCTGGAGTGAATTTGCAGATTTCACATTGGCTCTAATTAATCAGACCAATCACAAAATGACGATAAGATATGAAGCTAAACATGATTTCACAGAGGCAGGGTACCTTTACGGTTATTCCAAGTTCATAACATTCAGTGAACTCCGTGACCCTATTGGTGGATTTATTGTGAATGATATTTGTGTAATTGAAGCTGAGATTACTGTTTGCAACTCAGAAGAACATGATCAGAGTCAACTCAATAATTCTTTACCTGAGCAAATTTCCTCATCATCACAGCGTGATCTTGTGGATTTCAAGGGTTTAGTGAAAATAGAAAAGGCTTTTGTTCCATTACTAGAGGAAGTATGTTCATGGCATCCCTCACTTGTTGAATTCCTGAAGAAGAGAAGTCGTACACATATGTTTAACGAATGGGCATTTACTGCTTTGGGTCGAGTTCTACATTTTCTAAAGAATAAAAAGGTGAAAGATATGAATGATGATGCTTGTAATCATCTTCAAATTTTATGGGAAGAACTTGAGGCATTTAGGTTTGATCTTTCCTGGCTGAAACCTCATGTTCAGTTTGCCTTAGATATTAAAAGTTATCATGAGAGAGCTGTGCATGTGAAGAAGTTGAGGAAGAATGTAGATATTCTTGAAGCAAATCTTAAAATAGCAAGAAGAGAGTTGGTTAAAGCTGAAGAAGGCTTCGAAGAGAGGGATCTCAATGCTGAACTTGGATATGGAAAACCATAG 954 0.3721 MIKSPEARVDKFTWKIENFSKLDSRTSLNFKKLFYSQNFFLCGHPWWICIYPMGENVDYFKIYLDVDSLPRGWSEFADFTLALINQTNHKMTIRYEAKHDFTEAGYLYGYSKFITFSELRDPIGGFIVNDICVIEAEITVCNSEEHDQSQLNNSLPEQISSSSQRDLVDFKGLVKIEKAFVPLLEEVCSWHPSLVEFLKKRSRTHMFNEWAFTALGRVLHFLKNKKVKDMNDDACNHLQILWEELEAFRFDLSWLKPHVQFALDIKSYHERAVHVKKLRKNVDILEANLKIARRELVKAEEGFEERDLNAELGYGKP* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2364 317 SMART math_3 11 119 IPR002083 GO:0005515
Lja5g2364 317 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 10 310 - -
Lja5g2364 317 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 10 310 - -
Lja5g2364 317 Coils Coil 275 302 - -
Lja5g2364 317 Pfam MATH domain 18 140 IPR002083 GO:0005515
Lja5g2364 317 CDD MATH 11 139 IPR002083 GO:0005515
Lja5g2364 317 SUPERFAMILY TRAF domain-like 11 143 - -
Lja5g2364 317 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 7 154 IPR008974 GO:0005515
Lja5g2364 317 ProSiteProfiles MATH/TRAF domain profile. 9 138 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2364 Lja-Chr5 43851336 43852986 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2364 - - adu:107476101 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2364 5 43851336 43852986 Lja5g1063 5 10730519 10752213 ECH
Lja5g2364 5 43851336 43852986 Lja5g2364 5 43851336 43852986 ECH
Lja5g2364 5 43851336 43852986 Lja6g1730 6 44394337 44424129 ECH
Lja5g2364 5 43851336 43852986 Lja1g0594 1 5417342 5439401 PCT