Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1399 ATGTCTGGAACTTTTTCACCCAATTCAGGGTCTTTGAAGAAGAGAGCCTCAAGTAAGTTCAGGAATTCTTTATCAAGAAAAGGTAGGAGATCTAGCAAGGTTATGTCTGTTGAAATTGAGGATATCCGTGATGCTGAGGAGTTAGCAGCTGTTGAGCAGTTCCGAGAAATTCTTGTGTCAGAGGACCTTCTCCCTGCTAAGCATGATGATTATCATATTATGCTGAGGTCACATATATTTCTGGATTTTGATTTCAAGGAACAAAGTGAAGTTTTAAAATATTATCCCCAAGGGCATCATGGAGTAGATAAAGATGGACGACCCGTGTACATCGAGAGATTAGGTCTAGTAGACTCAAACAAGCTGATGCAAGTGACATCCTTAGATCGCTATATCAAGTACCATGTAAGGGAGTTTGAGAGGACATTTGACATAAAGTTGCCAGCATGTTCAATTGCTGCAAAGAAGCATATTGATCAAAGTACAACCATCCTCGATGTGCAAGGAGTGGGGCTTAAGAACTTTAGCAAATCTGCCAGAGATCTTGTTACTGCCCTTCAGAAGATTGACGGTGACAATTATCCAGAGAGCTTGAATCGTATGTTCATCATCAATGCTGGTTCTGGATTCAGAATGTTATGGAGCACTGTAAAATCCTTCCTTGATCCTAAGACCACGGCAAAAATTAATGTGAGAATAAACCATATGCTAAATCTTCTTGTTTTATCAGGTGAGGATGTGAATGGACAAAAGGTTCTAAATGGTGACCATAAATATTCAAGCAAAACTGAGTCCCATGATGTGGTGGAAGATAAGACAGTGTCCGAGGTAGTTCCAGTGCCTGAGGCAACACCAACACCAGTTTCTGAGGTAGTGCCAGTGTCTGAACCAGTGCGTACCAGTGACCCCATTAGTCTCATAAAAGAAACTCCAGTACGTGATGAGGTCCCTGCTATTAAAGCTTTCAAATCTGAGGACATAGTCCCAGTGGCTGATAAAATGGCTGTGAAAAAAGTTGAAGACAGCGAGAGATTAGTCTTATCAAAAGCTGGAACAGACACATTGATCAATATGGCTGACACTTACAAGCTGCACGAGAAACTCAACTACCAGCTTTTCACTGGTGTCATGGCCTTTGTAATGGGAATCCTGACCATGGTCAAAATGACACGAAACATGCCGAAGAAGATCACCGATGGCAACTTATACTCCAATCCTGCTTTCGTTGCCGAGCAGACGTATACAGGGCAGGCCCCTGCTAATGATCCCTTGCCCACCATCTCTGCTGAAGAATTTATGACTGTTCTTAAACGCATGGCTGAGTTGGAAGAGAAAATGGTCACCATGAACATACCTACTTACATGCCACCGGAGAAGGAGGAAATGCTGATTGCTGCTATGGACAGAGCCGATGTATTGGAGAAAGAACTTATGGCTACCAAGAAGGCCTTGGAGGATTCACTTGCCCAACAAGAGGAGCTTTTAGCTTATATTGACAAGAAGAAGAAGAAGAAATGGGGTAAAGAGGAGCATGGGAATGACATTGGTAAACTTATGAGTTTCGTTGAAATGCCATCAGTCTATTGGCGAGAGGTGGCTGACAACTGGTTTGGGGCTCCTTGTTGTTCATTTGGAGGCATAAGTGAGAAGCTGGTGATCAAATATGCGAATTCTTATACTTGGGCACCAGGGAGTTCAAGGTTTGCAGATTCTGAGAATGAAAACCTTCATGTGAACTTGGGACATGGAGTTGGTAAAAACAAATCTAATCATGATGACTTCTCTCTTTCATACCCAGATTCACATTTCCCCGCAGGTGTGGCCGTGGCTCCCAGTTGTTGTGCTCATATGACAAGCAGTGTTCACATTCTTGAGAATGAGGACTGGCAACACCGATGCTGTGAAAATGCCAGAAAAGAACATAGAGATACAACAGCCGTGGAAATTCTTGCAAGTTAG 1959 0.4288 MSGTFSPNSGSLKKRASSKFRNSLSRKGRRSSKVMSVEIEDIRDAEELAAVEQFREILVSEDLLPAKHDDYHIMLRSHIFLDFDFKEQSEVLKYYPQGHHGVDKDGRPVYIERLGLVDSNKLMQVTSLDRYIKYHVREFERTFDIKLPACSIAAKKHIDQSTTILDVQGVGLKNFSKSARDLVTALQKIDGDNYPESLNRMFIINAGSGFRMLWSTVKSFLDPKTTAKINVRINHMLNLLVLSGEDVNGQKVLNGDHKYSSKTESHDVVEDKTVSEVVPVPEATPTPVSEVVPVSEPVRTSDPISLIKETPVRDEVPAIKAFKSEDIVPVADKMAVKKVEDSERLVLSKAGTDTLINMADTYKLHEKLNYQLFTGVMAFVMGILTMVKMTRNMPKKITDGNLYSNPAFVAEQTYTGQAPANDPLPTISAEEFMTVLKRMAELEEKMVTMNIPTYMPPEKEEMLIAAMDRADVLEKELMATKKALEDSLAQQEELLAYIDKKKKKKWGKEEHGNDIGKLMSFVEMPSVYWREVADNWFGAPCCSFGGISEKLVIKYANSYTWAPGSSRFADSENENLHVNLGHGVGKNKSNHDDFSLSYPDSHFPAGVAVAPSCCAHMTSSVHILENEDWQHRCCENARKEHRDTTAVEILAS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1399 652 Pfam CRAL/TRIO domain 93 231 IPR001251 -
Lele56g1399 652 Gene3D - 77 257 IPR036865 -
Lele56g1399 652 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 87 261 IPR001251 -
Lele56g1399 652 MobiDBLite consensus disorder prediction 1 30 - -
Lele56g1399 652 CDD SEC14 86 240 IPR001251 -
Lele56g1399 652 SUPERFAMILY CRAL/TRIO domain 89 231 IPR036865 -
Lele56g1399 652 MobiDBLite consensus disorder prediction 1 18 - -
Lele56g1399 652 Coils Coil 470 494 - -
Lele56g1399 652 SMART sec14_4 87 252 IPR001251 -
Lele56g1399 652 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 11 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1399 Lele-ChrLele56 17060799 17068452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1399 98 231 Acyl Lipid Metabolism Gene Families AT5G47730 31.343 7.24e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g1463 55 20793138 20798812 Lele56g1399 56 17060799 17068452 ECH
Lele56g1399 56 17060799 17068452 Lele56g1399 56 17060799 17068452 ECH
Lele53g0034 53 284539 289478 Lele56g1399 56 17060799 17068452 hybridization
Lele54g0029 54 286509 299157 Lele56g1399 56 17060799 17068452 hybridization