Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0029 ATGTCTGGAACTTTTTCACCCAATTCAGGGTCTTTGAAGAAGAGAGCCTCAAGTAAGTTCAGGAATTCTTTATCAAGAAAAGGTAGGAGATCTAGCAAGGTTATGTCTGTTGAAATTGAGGATATACGTGATGCTGAGGAGTTAGCAGCTGTTGAGCAGTTCCGAGAAATTCTTGTGTCAGAGGACCTTCTCCCTGCTAAGCATGATGATTATCATATGATGCTGAGATTCCTAAAGGCCAGGAAATTTGATATTGAGAAAACAAAACAAATGTGGTCTGACATGCTCCAGTGGAGAAAGGAATTTGGTACTGACGCAATTATGGAGGATTTTGATTTCAAGGAACAAAGTGAAGTTTTAAAATATTATCCCCAAGGGCATCATGGAGTAGATAAAGATGGACGACCAGTGTACATCGAGAGATTAGGTCTAGTAGACTCAAACAAGCTGATGCAAGTGACATCCTTAGATCGCTATATCAAGTACCATGTAAGGGAGTTTGAGAGGACATTTGACATAAAGTTGCCAGCATGTTCAATTGCTGCAAAGAAGCATATTGATCAAAGTACAACCATCCTCGATGTGCAAGGAGTGGGGCTTAAGAACTTTAGCAAATCTGCCAGAGATCTTGTTGCTGCCCTTCAGAAGATTGACGGTGACAATTATCCAGAGAGCTTGAATCGTATGTTCATCATCAATGCTGGTTCTGGATTCAGAATGTTATGGAGCACTGTAAAATCCTTCCTTGATCCTAAAACCACGGCAAAAATTAATGTTCTTGGCAACAAGTACCAGAGCAAATTGCTTGAAATAATTGATGCAAGTGAATTGCCAGAATTTTTGGGAGGCACTTGCACCTGTGCTGATCAAGGAGGTTGTATGCTTTCTGACAAGGGCCCATGGAAGAATGAAGAAATATTAAGGAAGGTTCTAAATGGTGACCATAAATGTTCAAGCAAAACTGAGTCCCATGATGTGGTGGAAGATAAGACAGTGTCCGAGGTAGTTCCAGTGCCTGAGGCACCAACACCAGTTTCTGAGGTAGTGCCAGTGTCTGAACCAGTGTGTACCAGTGACCCCAGTAGTCTCATAAAAGAAACTCCAGTACGTGATGAGGTCCCTGCTATTAAAGCTTTCAAATCTGAGGACATAGTCCCGGTGGCTGATAAAATGGCTGTGAAGCAAGTTGAAGACAGCGAGAGATTAGTCTTATCAAAAGACACATTGATCAATATGGCTGATACTTACAAGCTCCACGAGAAACTCAACTACCAGCTTTTCACTGGTGTCATGGCCTTTGTTATGGGAATCCTGACCATGGTCAAAATGACACGAAACATGCCGAAGAAGATCGCCGATGGCAACTTATACTCCAATCCTGCTTTCGTTGCCGAGCAGACGTATACAGGGCAGGCCCCTGCTAACGATCCCTTGCCCACCATCTCTGCTGAAGAATTTATGACTGTTCTTAAACGCATGGCTGAGTTGGAAGAGAAAATGGTCACCATGAACATACCTGCTTACATGCCACCGGAGAAGGAGGAAATGCTGATTGCTGCTATGGACAGAGCCGATGTATTGGAGAAAGAACTTATGGCTACCAAGAAGGCCTTGGAGGATTCACTTGCCCAACAAGAGGAGCTTTTAGCTTATATTGACAAGAAGAAGAAGAAGAAATGGCATGGGAATGTCATTGACGAAGAATGGCGGCCGGTGATGACAAACACTCTAGATACTTGGGAAGCACAGTTCCACATCCCTACTCTTCGTCTCTTGCTTTTCGCCGAAAATTCTAATCCTTCTTTGGAATGCCTCAATCTGAAGGTTCAACGTCTTCCTTCTCAGTCTGGGGTGGCTGTGAGCTGGCTTGAGCGTGCCCAAGTCTCACTTAGGGTTCCGATTCCTAGGGTTTTGGTTGACTTTGAATCCCCTGTCAATGTAAAAAATTTATCTTCCAGAGCAGAAGTTCATTTTTACTGCAGAAGTTGCTCGTTCAAATTGACTAGAAATCCTCTCAGTATAAGTGAGAAGCTGGTGATCAAATATGCGAATTCTTATACTTGTGCACCAGGGGTATGCCTATTAAGCTCTACATCTATTAATCTTTGCAAGGATGATCTTATAGAATATAACTTCCCTGAACGTGGTGGAGAAGAGTGTAATTCTAAATCAGATAAATTTGAAGGAGTTAACAAAGCTGCAATAAATTCTGAGATATCTATGGAAAGATCTTCAACTTGCAGTGAGATTGGTAAAACCATATATAATTCTGACGGAGAGTTCAAGGTTTGCAGATCTGCAATGACCATGACTGCGTTTAAGGTGCTGCACATTAAACGATTTGAAACACATTACGACCGCCTTTTGCTTTGGTGCCTGAATGAATCCCGGGCGTTTCTGGACTCTGACTTGGCGGTTCAATTTTGCAAAGATGTAGAGAGTAGATCACAAACGGTAGTCCATGTTACCATGCCTTCAAGCCAATCTGATTTCGTCCAACTGTTTTACAGTGGCGACCTGCCAGGTTGTGAACAAAGTTATGATAAAATGGGTCGAACAGCCCAGGTGAATATTGTATGTGGGACTTGTCCAAATGGACAATGTAAAGAATGCCTTTATGATTTTGCTTTCTGA 2634 0.4248 MSGTFSPNSGSLKKRASSKFRNSLSRKGRRSSKVMSVEIEDIRDAEELAAVEQFREILVSEDLLPAKHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDAIMEDFDFKEQSEVLKYYPQGHHGVDKDGRPVYIERLGLVDSNKLMQVTSLDRYIKYHVREFERTFDIKLPACSIAAKKHIDQSTTILDVQGVGLKNFSKSARDLVAALQKIDGDNYPESLNRMFIINAGSGFRMLWSTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMLSDKGPWKNEEILRKVLNGDHKCSSKTESHDVVEDKTVSEVVPVPEAPTPVSEVVPVSEPVCTSDPSSLIKETPVRDEVPAIKAFKSEDIVPVADKMAVKQVEDSERLVLSKDTLINMADTYKLHEKLNYQLFTGVMAFVMGILTMVKMTRNMPKKIADGNLYSNPAFVAEQTYTGQAPANDPLPTISAEEFMTVLKRMAELEEKMVTMNIPAYMPPEKEEMLIAAMDRADVLEKELMATKKALEDSLAQQEELLAYIDKKKKKKWHGNVIDEEWRPVMTNTLDTWEAQFHIPTLRLLLFAENSNPSLECLNLKVQRLPSQSGVAVSWLERAQVSLRVPIPRVLVDFESPVNVKNLSSRAEVHFYCRSCSFKLTRNPLSISEKLVIKYANSYTCAPGVCLLSSTSINLCKDDLIEYNFPERGGEECNSKSDKFEGVNKAAINSEISMERSSTCSEIGKTIYNSDGEFKVCRSAMTMTAFKVLHIKRFETHYDRLLLWCLNESRAFLDSDLAVQFCKDVESRSQTVVHVTMPSSQSDFVQLFYSGDLPGCEQSYDKMGRTAQVNIVCGTCPNGQCKECLYDFAF 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0029 877 Gene3D - 27 102 - -
Lele54g0029 877 CDD SEC14 114 284 IPR001251 -
Lele54g0029 877 Gene3D - 103 314 IPR036865 -
Lele54g0029 877 Coils Coil 524 548 - -
Lele54g0029 877 SUPERFAMILY CRAL/TRIO N-terminal domain 44 111 IPR036273 -
Lele54g0029 877 SMART sec14_4 115 286 IPR001251 -
Lele54g0029 877 MobiDBLite consensus disorder prediction 1 18 - -
Lele54g0029 877 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 11 556 - -
Lele54g0029 877 ProSiteProfiles Ig-like domain profile. 587 688 IPR007110 -
Lele54g0029 877 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 115 289 IPR001251 -
Lele54g0029 877 FunFam SEC14 cytosolic factor 103 315 - -
Lele54g0029 877 MobiDBLite consensus disorder prediction 1 29 - -
Lele54g0029 877 Pfam CRAL/TRIO, N-terminal domain 67 94 IPR011074 -
Lele54g0029 877 SUPERFAMILY CRAL/TRIO domain 117 306 IPR036865 -
Lele54g0029 877 Pfam CRAL/TRIO domain 121 283 IPR001251 -
Lele54g0029 877 SMART CRAL_TRIO_N_2 70 95 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0029 Lele-ChrLele54 286509 299157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0029 50 280 Acyl Lipid Metabolism Gene Families AT5G47730 28.571 6.23e-21 93.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0034 53 284539 289478 Lele54g0029 54 286509 299157 ECH
Lele54g0029 54 286509 299157 Lele54g0029 54 286509 299157 ECH
Lele54g0029 54 286509 299157 Lele55g1463 55 20793138 20798812 hybridization
Lele54g0029 54 286509 299157 Lele56g1399 56 17060799 17068452 hybridization