Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1463 ATGTCTGGAACTTTTTCACCCAATTCAGCTATTGAAAGATGTGATGGTGCAGGGTCTTTGAAGAAGAGAGCCTCAAATAAGTTCAGGAATTCTTTGTCAAGAAAGGGTAGGAGATCCAGCAAGGTCATGTCTGTTGAAATTGAGGATATCCGTGATGCTGAAGAGTCTGCAGCTGTTGAGCAGTTCCGAGAAATTCTTGCGTCAGAGGACCTTCTCCCTGCTAAGCATGATGATTATCATACGATGCTGAGGTCACATATATCTCTGGATTTTGATTTCAAGGAACAAAGTGAAGTTTTAAAATATTATCCCCAAGGGCATCATGGAGTAGATAAAGATGGACGACCAGTGTACATCGAGAGATTAGGTCTAGTAGACTCAAACAAGCTGATGCAAGTGACATCCTTAGATCGCTATATCAAGTACCATGTAAGGGAGTTTGAGAGGACATTTGACATAAAATTGCCAGCATGTTCAATTGCTGCAAAGAAGCACATTGATCAAAGTACAACCATCCTCGATGTGCAAGGAGTGGGGCTTAAGAACTTTAGCAAATCTGCCAGAGATCTTGTTACTGCCCTTCAGAAGATTGACGGTGACAATTATCCAGAGAGCTTGAATCGTATGTTCATCATCAATGCCGGTTCTGGATTCAGAATGTTATGGAGCACTGTAAAATCCTTCCTTGATCCTAAGACCACGGCGAAAATTAATGTGAGAATGAGCCATACACTAAATCTGCTTGTTTTGTCAGGTGAGGATGTGAATGGGCAAAAGGTTCTAAATGGTGACCATAAATGTTCAAGCAAAACTGAGTCACATGATGTGGTGGAAGATAAGACAGTGTCCGAGGTAGTTCCAGTGCCTGAGGCAACACCAAAACCAGTTTTTGAGGTAGTGCCAGTGTCTGAATCAGTGCCTACCAGTGACCCCATCATTCTCACGAAAGAAACTCCAGTACTTAATGAGGTCCCTGCGATTAAAGCTTTCAAATCTGAGGACGTAGTCCCAGTGGCTGATAAAATGGCTGTGAAAAAACTTGAAGACAACGAGAGATTAGTCTTATCAAACGCTGGAATAGACACATTGATCAATATGGCTGATACTTACAAGCTCCACGAGAAATTAAACTACCAGCTTTTCACTGGTGTCATGGCCTTTGTTATGGGAATCCTGACCATGGTCAAAATGACACGAAACATGCCGAAGAAGATCACCGATGGAAACTTGTACGCCAATCCTACTTTCGCTGCTGAGCAGACGTATACAGGGCAGGTCCCTACTAACGACCCCTTGCCCACCATCTCTGCTGAAGAATTTATGACTGTTCTTAAACGCATGGCTGAGTTGGAAGAGAAAATGGTCACCATGAACATACCTGCTTACATGCCACCCGAGAAGGAGGAAATGCTGATTGCTGCTATGGACAGAGCCGATGTATTGGAGAAAGAACTTATGGCTACCAAGAAGGCCTTGGAGGATTCACTTGTCCAACAAGAGGAGCTTTTAGCTTATATTGACAAGAAGAGGAAGAAGAAATGGCTGTGGCCTGATTTGTTCTTTGCGAATGTGCCTGCAGCATTCTTAGGGGTTGGAGCTTTGAATTTTACAATGAAGATCAGTATGACCTTTATGCTGCGTTTGGTACGATCAAAGTATGGAAGTGGGAGTGAAAATGAAAATGAGTTTGTTGCTTGTTTGGTGTATCATAATGACACTTACACCAAAATGGCTAGAAGTTATTTCTATTGTTGGAACTTGGAAGTGTGGACCGAAAACTTGCATGGAACTGGGTGTGAAAAGACTGTATTTCTAAGTTTGATTAAGAACGTTGTTGAGAAATGGATTGAGCTTCATATTTTATATCTGTAA 1872 0.4215 MSGTFSPNSAIERCDGAGSLKKRASNKFRNSLSRKGRRSSKVMSVEIEDIRDAEESAAVEQFREILASEDLLPAKHDDYHTMLRSHISLDFDFKEQSEVLKYYPQGHHGVDKDGRPVYIERLGLVDSNKLMQVTSLDRYIKYHVREFERTFDIKLPACSIAAKKHIDQSTTILDVQGVGLKNFSKSARDLVTALQKIDGDNYPESLNRMFIINAGSGFRMLWSTVKSFLDPKTTAKINVRMSHTLNLLVLSGEDVNGQKVLNGDHKCSSKTESHDVVEDKTVSEVVPVPEATPKPVFEVVPVSESVPTSDPIILTKETPVLNEVPAIKAFKSEDVVPVADKMAVKKLEDNERLVLSNAGIDTLINMADTYKLHEKLNYQLFTGVMAFVMGILTMVKMTRNMPKKITDGNLYANPTFAAEQTYTGQVPTNDPLPTISAEEFMTVLKRMAELEEKMVTMNIPAYMPPEKEEMLIAAMDRADVLEKELMATKKALEDSLVQQEELLAYIDKKRKKKWLWPDLFFANVPAAFLGVGALNFTMKISMTFMLRLVRSKYGSGSENENEFVACLVYHNDTYTKMARSYFYCWNLEVWTENLHGTGCEKTVFLSLIKNVVEKWIELHILYL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1463 623 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 95 269 IPR001251 -
Lele55g1463 623 Gene3D - 82 281 IPR036865 -
Lele55g1463 623 Pfam CRAL/TRIO domain 101 241 IPR001251 -
Lele55g1463 623 SUPERFAMILY CRAL/TRIO domain 97 242 IPR036865 -
Lele55g1463 623 SMART sec14_4 95 260 IPR001251 -
Lele55g1463 623 Coils Coil 482 502 - -
Lele55g1463 623 CDD SEC14 94 243 IPR001251 -
Lele55g1463 623 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 16 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1463 Lele-ChrLele55 20793138 20798812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1463 106 239 Acyl Lipid Metabolism Gene Families AT5G47730 31.343 1.44e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g1463 55 20793138 20798812 Lele56g1399 56 17060799 17068452 ECH
Lele55g1463 55 20793138 20798812 Lele55g1463 55 20793138 20798812 ECH
Lele53g0034 53 284539 289478 Lele55g1463 55 20793138 20798812 hybridization
Lele54g0029 54 286509 299157 Lele55g1463 55 20793138 20798812 hybridization