Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0034 ATGTCTGGAACTTTTTCACCCAATTCAGCTCTTGAAAGATGTGATGGTGCAGGGTCTTTGAAGAAGAGAGGCTCAAATAAGTTCAGGAATTCTTTGTCAAGAAAGGGTAGGAGATCCAACAAGGTCATGTCTGTTGAAATTGAGGATATCCGTGATGCTGAAGAGTCTGCAGCTGTTGAGCAGTTCCGAGAAATTCTTGTGTCACAGGACCTTCTCCCAGCTAAGCATGATGATTATCATACGATGCTGAGGTCACATATATCTGTGGATTTTGATTTCAAGGAACAAATTGAAGTTTTAAAATATTATCCCCAAGGGCATCATGGAGTAGATAAAGATGGACGACCCGTGTACATCGAGAGATTAGGTCTAGTAGACTCAAATAAGCTGATGCAAGTGACATCCTTAGATCGCTATATCAAGTACCATGTAAGGGAGTTTGAGAGGACATTTGACATAAAGTTGCCAGCATGCTCAATTGCTGCAAAGAAGCACATTGATCAAAGTACAACCATCCTCGATGTGCAAGGAGTGGGGCTTAAGAACTTCAGCAAATCTGCCAGAGATCTTGTTACTGCCCTTCAGAAGATTGACGGTGACAATTATCCAGAGAGCTTGAATCGTATGTTCATCATCAATGCCGGTTCTGGATTTAGAATGTTATGGAGCACTGTAAAATCCTTCCTTGATCCTAAGACCACGGCGAAAATTAATGTGAGAATGAACCATACACTAAATCTGCTTGTTTTGTCAGGTGAGGATGTGAATGGGCAAAAGGTTCTAAATGGTGACCATAAATGTTCAAGCAAAACTGAGTCACATGATGTGGTGGAAGATAAGACAGTGTCCGAGGTAGTTCCAGTGCTTGAGGAAACACCAAAACCAGTTTTTGAGGTAGTGCCAGTGTCTGAATCAGTGCCTACCAGTGACCCCATCATTCTCACAAAAGAAACTCCAGTACGTAATGAGGTCCCTGCTATTAAAGCTTTCACATCTGAGGACGTAGTCCCAGTGGCTGATAAAATGGCTGTGAAAAAAGTTGAAGACAACGAGAGATTAGTCTTATCAAAAGCTGGAATAGACACATTGATCAACATGGCTGATACTTACAAGCTCCACGAGAAATTAAACTACCAGCTTTTCACTGGTGTCATGGCCTTTGTTATGGGAATCCTGACCATGGTCAAAATGACACGAAACATGCCGACGAAGATCACCGATGGAAACTTGTACGCCAATCCTACTTTCGCTGCTGAGAAGACGTATACAGGACAGGTCCCTGCTAACGACCCCTTACCCACCATCTCTGCTGAAGAATTTATGACTGTTCTTAAACGCATGGCTGAGTTGGAAGAGAAAATGGTCACCATGAACATACCTGCTTACATGCCACCCGAGAAGGAGGAAATGCTGATTGCTGCTATGGACAGAGCCGATGTATTGGAGAAAGAACTTATGGCTACGAAGAAGGCCTTGGAGGATTCGCTTGCCCAACAAGAGGAGCTTTTAGGTTATATTGACAAGAAGAAGAAGAAGAAATGGGTACACCACCAAAACCATAACCATAAAGTTGCTCACAGATTTTGTTTACTCAAGGATCTCTGGGTTTTTAACTTTTTATCGTTCCCCTTTGTTGTAATGCAGTTTGGATGA 1653 0.4253 MSGTFSPNSALERCDGAGSLKKRGSNKFRNSLSRKGRRSNKVMSVEIEDIRDAEESAAVEQFREILVSQDLLPAKHDDYHTMLRSHISVDFDFKEQIEVLKYYPQGHHGVDKDGRPVYIERLGLVDSNKLMQVTSLDRYIKYHVREFERTFDIKLPACSIAAKKHIDQSTTILDVQGVGLKNFSKSARDLVTALQKIDGDNYPESLNRMFIINAGSGFRMLWSTVKSFLDPKTTAKINVRMNHTLNLLVLSGEDVNGQKVLNGDHKCSSKTESHDVVEDKTVSEVVPVLEETPKPVFEVVPVSESVPTSDPIILTKETPVRNEVPAIKAFTSEDVVPVADKMAVKKVEDNERLVLSKAGIDTLINMADTYKLHEKLNYQLFTGVMAFVMGILTMVKMTRNMPTKITDGNLYANPTFAAEKTYTGQVPANDPLPTISAEEFMTVLKRMAELEEKMVTMNIPAYMPPEKEEMLIAAMDRADVLEKELMATKKALEDSLAQQEELLGYIDKKKKKKWVHHQNHNHKVAHRFCLLKDLWVFNFLSFPFVVMQFG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0034 550 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 17 84 - -
Lele53g0034 550 MobiDBLite consensus disorder prediction 1 35 - -
Lele53g0034 550 SUPERFAMILY CRAL/TRIO domain 97 242 IPR036865 -
Lele53g0034 550 SMART sec14_4 95 260 IPR001251 -
Lele53g0034 550 Pfam CRAL/TRIO domain 101 244 IPR001251 -
Lele53g0034 550 Coils Coil 478 502 - -
Lele53g0034 550 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 95 269 IPR001251 -
Lele53g0034 550 CDD SEC14 94 243 IPR001251 -
Lele53g0034 550 Gene3D - 82 281 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0034 Lele-ChrLele53 284539 289478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0034 106 239 Acyl Lipid Metabolism Gene Families AT5G47730 31.343 8.58e-12 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0034 53 284539 289478 Lele54g0029 54 286509 299157 ECH
Lele53g0034 53 284539 289478 Lele53g0034 53 284539 289478 ECH
Lele53g0034 53 284539 289478 Lele55g1463 55 20793138 20798812 hybridization
Lele53g0034 53 284539 289478 Lele56g1399 56 17060799 17068452 hybridization