Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1360 ATGCCCGTAATATTAAGGAATAAAAGAAAATCGGAGTTACTGCTTCCGAGTGCCCTACCAGCTGCAAAAACCTCCAATTCTTTCTTAGCTAATATCCTTCTCCCTCTCTCTCTCTCTCAAACCAGGTTCTTTCCACATCATATTCCTGAATATTTTTTCTCCTTTCCTCGTATTTATCTCGGTTGCTCGCTAATCTCTTCTCCGTTTTTCTCAGATTTGAATATGATTAAATTATTCAAAGTAAAGGAAAAACAGAGAGAACTTGCAGAGAATGCAAGTGGTGGAGCACCGATTAAGAAGCAAACTGCTGGGGAGTTGCGTCTGCACAAAGATATAAGTGAGCTGAATCTACCAAAATCTTGTACCATGCAATTCCCCAATGGTAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGGCCTGATGAAGGATATTATACGGGTGGTACATTTTTGTTTTCCTTCCAAGTGTCTCCCATCTATCCACATGAGGCGCCAAAAGTCAAGTGCAAGACAAAGGTCTACCATCCAAATATTGATTTGGAAGGAAATGTTTGCCTCAACATCTTACGAGAAGATTGGAAACCTGTTCTGAATATAAACACAGTCATTTATGGGCTGTATCATCTTTTCACGGAGCCTAATTATGAGGACCCTCTCAATCATGATGCGGCGGCAGTTTTGAGAGAGAATCCCAAAATGTTCGAGTCTAATGTAAGGCGGGCTATGGCTGGTGGGTACGTGGGGCAAACCTTTTTCCCTCGCTGTCTGTAA 774 0.4147 MPVILRNKRKSELLLPSALPAAKTSNSFLANILLPLSLSQTRFFPHHIPEYFFSFPRIYLGCSLISSPFFSDLNMIKLFKVKEKQRELAENASGGAPIKKQTAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVSIRPDEGYYTGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQTFFPRCL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1360 257 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 175 190 IPR023313 -
Lele56g1360 257 Gene3D Ubiquitin Conjugating Enzyme 99 257 IPR016135 -
Lele56g1360 257 CDD UBCc 107 241 IPR000608 -
Lele56g1360 257 SUPERFAMILY UBC-like 97 255 IPR016135 -
Lele56g1360 257 SMART ubc_7 106 248 - -
Lele56g1360 257 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 103 248 IPR000608 -
Lele56g1360 257 FunFam NEDD8-conjugating enzyme Ubc12 99 257 - -
Lele56g1360 257 Pfam Ubiquitin-conjugating enzyme 107 242 IPR000608 -
Lele56g1360 257 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 131 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1360 Lele-ChrLele56 16756155 16761131 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g1427 55 20520688 20523147 Lele56g1360 56 16756155 16761131 ECH
Lele56g1360 56 16756155 16761131 Lele56g1360 56 16756155 16761131 ECH
Lele53g0070 53 545582 551071 Lele56g1360 56 16756155 16761131 hybridization
Lele54g0072 54 589574 593439 Lele56g1360 56 16756155 16761131 hybridization