Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1427 ATGATTAAATTATTCAAAGTAAAGGAAAAACAGAGAGAACTTGCAGAGAATGCAAGCGGTGGAGCACCGGTTAAGAAGCAAACTGCTGGGGAGTTGCGTCTGCACAAAGATATAAGTGAGCTGAATCTACCAAAATCTTGTACCATGCAATTCCCCAATGGTAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGGCCTGATGAAGGATATTATATGGGTGGTTCATTTTTGTTTTCCTTCCAAGTGTCTCCCATCTATCCACATGAGGCGCCAAAAGTCAAGTGCAAGACAAAGGTCTACCATCCAAATATTGACTTGGAAGGAAATGTTTGCCTCAACATCTTACGAGAAGATTGGAAACCTGTTCTGAATGTAAACACAGTCATTTATGGATTGTATCATCTTTTCACGGAACCAAATTATGAGGACCCTCTCAATCATGATGCGGCGGCAGTTTTGAGAGAGAATCCCAAAATGTTTGAGTCTAATGTAAGGAGGGCCATGGCTGGCGGGTACGTGGGGCAAATGTTTTTCCCTCGCTGTATGTAA 552 0.4185 MIKLFKVKEKQRELAENASGGAPVKKQTAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVSIRPDEGYYMGGSFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNVNTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQMFFPRCM 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1427 183 Pfam Ubiquitin-conjugating enzyme 33 168 IPR000608 -
Lele55g1427 183 CDD UBCc 33 167 IPR000608 -
Lele55g1427 183 Gene3D Ubiquitin Conjugating Enzyme 25 183 IPR016135 -
Lele55g1427 183 SMART ubc_7 32 174 - -
Lele55g1427 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Lele55g1427 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 57 161 - -
Lele55g1427 183 FunFam NEDD8-conjugating enzyme Ubc12 25 183 - -
Lele55g1427 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Lele55g1427 183 SUPERFAMILY UBC-like 23 181 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1427 Lele-ChrLele55 20520688 20523147 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele55g1427 55 20520688 20523147 Lele56g1360 56 16756155 16761131 ECH
Lele55g1427 55 20520688 20523147 Lele55g1427 55 20520688 20523147 ECH
Lele53g0070 53 545582 551071 Lele55g1427 55 20520688 20523147 hybridization
Lele54g0072 54 589574 593439 Lele55g1427 55 20520688 20523147 hybridization