Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0072 ATGGGGGTAGCAGGCGGTAGGGGTACAGAGCGTCGATTAGCCCAAAAACAGAGAGGAATTGTCCTACTGAATGACCGGAGGCGTGCCCCCCTGCAAAAACCTCCAATTCTTTCTTCGCTATTATCCTTCTCTCTCTCTCCAACCAGATTTGTACGTGGATTTCTCTCTGCAAATCCGATCCCTCACCTCTCTCTCCCTTTTGCGTTTCTCGGGTTCTTGATCTTGAATATGATTAAATTATTCAAAGTAAAGGAAAAACAGAGAGAACTTGCAGAGAATGCAAGTGGTGGAGCACCGATTAAGAAGCAGACTGCTGGGGAGTTGCGTCTGCACAAAGATATAAGTGAGCTGAATCTACCAAAATCTTGTACCATGCAATTCCCCAATGGTAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGGCCTGATGAAAGATATTATATGGGTGGTACATTTTTGTTTTCCTTCCAAGTGTCTCCCATCTATCCACATGAGGCGCCCAAAGTCAAGTGCAAGACAAAGGTCTACCATCCAAATATTGACTTGGAAGGAAATGTTTGCCTCAACATCCTACGAGAAGATTGGAAACCTGTTCTGAATATAAACACAGTCATTTACGGATTGTATCATCTTTTCACGGAGCCAAATTATGAGGACCCTCTCAATCATGATGCGGCGGCAGTTTTGAGAGAGAATCCCAAAATGTTTGAGTCTAATGTAAGGCGGGCTATGGCTGGTGGGTACGTGGGGCAAACCTTTTTCCCTCGCTGTCTGTAA 780 0.4436 MGVAGGRGTERRLAQKQRGIVLLNDRRRAPLQKPPILSSLLSFSLSPTRFVRGFLSANPIPHLSLPFAFLGFLILNMIKLFKVKEKQRELAENASGGAPIKKQTAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVSIRPDERYYMGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQTFFPRCL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0072 259 FunFam NEDD8-conjugating enzyme Ubc12 101 259 - -
Lele54g0072 259 CDD UBCc 109 243 IPR000608 -
Lele54g0072 259 Pfam Ubiquitin-conjugating enzyme 109 244 IPR000608 -
Lele54g0072 259 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 105 250 IPR000608 -
Lele54g0072 259 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 177 192 IPR023313 -
Lele54g0072 259 SUPERFAMILY UBC-like 100 257 IPR016135 -
Lele54g0072 259 SMART ubc_7 108 250 - -
Lele54g0072 259 Gene3D Ubiquitin Conjugating Enzyme 101 259 IPR016135 -
Lele54g0072 259 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 133 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0072 Lele-ChrLele54 589574 593439 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0070 53 545582 551071 Lele54g0072 54 589574 593439 ECH
Lele54g0072 54 589574 593439 Lele54g0072 54 589574 593439 ECH
Lele54g0072 54 589574 593439 Lele55g1427 55 20520688 20523147 hybridization
Lele54g0072 54 589574 593439 Lele56g1360 56 16756155 16761131 hybridization