Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele53g0070 | ATGTTTACTGCTTCCGAGCGCAACCTCCAATTCTTCGTTCTCTCTGAAACCAGGAATATGATTAAATTATTCAAAGTAAAGGAAAAACAGAGAGAACTTGCAGAGAATGCAAGTGGTGGAGCACCGGTTAAGAAGCAAACTGCTGGGGAGTTGCGTCTGCACAAAGATATAAGTGAGCTGAATCTACCAAAATCTTGCACCATGCAATTCCCCAATGGTAAAGATGACCTGATGAACTTTGAGGTTTCAATTCGGCCCGATGAAGGATATTATGTGGGTGGTACATTTTTGTTTTCCTTCCAAGTGTCTCCCATCTATCCACATGAGGCGCCAAAAGTCAAGTGCAAGACAAAGGTCTACCATCCAAATATTGACTTGGAAGGAAATGTTTGCCTCAACATCTTACGAGAAGATTGGAAACCTGTTCTGAATGTAAACACAGTCATTTATGGATTGTATCATCTTTTCACGGAACCAAATTATGAGGACCCTCTCAATCATGATGCGGCGGCAGTTTTGAGAGAGAATCCCAAAATGTTTGAGTCTAATGTAAGGAGGGCCATGGCTGGCGGGTACGTGGGGCAAATGTTTTTCCCTCGCTGTATGTAA | 609 | 0.4269 | MFTASERNLQFFVLSETRNMIKLFKVKEKQRELAENASGGAPVKKQTAGELRLHKDISELNLPKSCTMQFPNGKDDLMNFEVSIRPDEGYYVGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNVNTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKMFESNVRRAMAGGYVGQMFFPRCM | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele53g0070 | 202 | Gene3D | Ubiquitin Conjugating Enzyme | 44 | 202 | IPR016135 | - | |
| Lele53g0070 | 202 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 76 | 180 | - | - | |
| Lele53g0070 | 202 | ProSitePatterns | Ubiquitin-conjugating (UBC) active site signature. | 120 | 135 | IPR023313 | - | |
| Lele53g0070 | 202 | SMART | ubc_7 | 51 | 193 | - | - | |
| Lele53g0070 | 202 | CDD | UBCc | 52 | 186 | IPR000608 | - | |
| Lele53g0070 | 202 | FunFam | NEDD8-conjugating enzyme Ubc12 | 44 | 202 | - | - | |
| Lele53g0070 | 202 | SUPERFAMILY | UBC-like | 42 | 200 | IPR016135 | - | |
| Lele53g0070 | 202 | Pfam | Ubiquitin-conjugating enzyme | 52 | 187 | IPR000608 | - | |
| Lele53g0070 | 202 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 48 | 193 | IPR000608 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele53g0070 | Lele-ChrLele53 | 545582 | 551071 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele53g0070 | 53 | 545582 | 551071 | Lele54g0072 | 54 | 589574 | 593439 | ECH | |
| Lele53g0070 | 53 | 545582 | 551071 | Lele53g0070 | 53 | 545582 | 551071 | ECH | |
| Lele53g0070 | 53 | 545582 | 551071 | Lele55g1427 | 55 | 20520688 | 20523147 | hybridization | |
| Lele53g0070 | 53 | 545582 | 551071 | Lele56g1360 | 56 | 16756155 | 16761131 | hybridization |