Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0272 ATGGGTCTGATGAGCTACAACAGAGTAGGAAGCGGCAGATCAGGATCGTCGTCGTCGTCGTCTTCTTCTTCTTCTTGCACCAGAGGCTTCAAGCTAAACCCTAGAAAGTTCTACGTTCTCAGGCTACGCAAGAGGCTCAGATTCTTCCTCACCCTCTTTGATAAGTGCAAGCTCTCTTACTCTCAAGCTCTTCGTCTTCTCCGGCGAGTTTTTCTCAGAAGAACTTGGTTCACAGCATCGAGGAGAAACTACTACAGCAGAAACAGTTTGACGGCGAAGGAGGAACAAGAACGGATCAAGAAGGGTCGAGTTTTCTATGCAAGGTCAAATTCGTCTTTCTACACGGAAGCCATTGCTGATTGCTTGGAGTTCATCAAACGAACGTCTATTTCCATGGACCCAATTCATCAAGACCCAGTTAGTCATGTTCAAGATTCAAATTCATCATCATCAATGGTTGCTTCTTTTCATCAGGGAGATCCTTCGTGGGGGCTTGCTGCAATGGATGATCTCAAGATTCTCAAAACCAAGCTCTGCATCATCGGAAGTGGTCCTGCTGCTCATACAGCTGCCATTTACGCTGCTCGTGCCGAGCTAAAGCCTATCCTCTTCGAAGGTTGGATGGCCAACGACATTGCACCTGGTGGTCAACTCACTACAACCACCGACGTCGAGAATTTCCCCGGATTTCCTGAAGGTATCATGGGCGGGGAGCTCATGGATCGTTGCCGGAAGCAATCAGAGCGATTCGGCACCGAAATCTTCACCGAGACTGTCTCCAAGGTAGCTACGGCGGTCCCGCTAGCCGATTTCTCACGCAGACCATTTAAGGTTTTCGCCGATTCCAAAACCGTGGAAGCCGAATCTGTTATCGTCGCCACTGGAGCCGTCGCCAAGCGATTGCCGTTTCCAGGCTCCGGCGATGGTCCCAATGGGTACTGGAATCGGGGCATTTCGGCTTGCGCAGTTTGCGATGGTGCTGCCCCCATTTTCAGGAACAAACCGTTGGCGGTAATTGGTGGTGGGGATTCGGCTATGGAAGAAGCCACCTTCTTGACCAAGTATGGTTCTAAAGTTTATATAATTCACAGGAGGGATGCATTTAGAGCTTCCAAGATTATGCAGGGCAAAGCGTTGAGTAATCCTAAGATTGAAGTGATATGGAACTCAACCGTCGTGGAAGCATATGGAGATTCATCTTTGAAGGGACTCAAGATAAAGAATGTAGCAACTGGCGATGTGTCTGATTTGAATGTTTCCGGATTGTTCTTTGCTATTGGACACGAGCCTGCGACGAAATTCTTGGATGGTCAACTCGAACTCGATTCTGATGGCTACATTGTGACTAAGCCAGGGACCACAAAGACGAGTGTTGAGGGAGTTTTTGCTGCTGGGGATGTCCAGGACAAGAAGTATAGGCAAGCTATTACGGCGGCAGGCTCTGGGTGCATGGCTGCTTTGGATGCTGAACATTACTTGCAGGAGGTCGGTTTTCAGGAGGCCAAACATGAACTTCATGGTGTGAAGCCATCTTCAAAAGATTGA 1545 0.488 MGLMSYNRVGSGRSGSSSSSSSSSSCTRGFKLNPRKFYVLRLRKRLRFFLTLFDKCKLSYSQALRLLRRVFLRRTWFTASRRNYYSRNSLTAKEEQERIKKGRVFYARSNSSFYTEAIADCLEFIKRTSISMDPIHQDPVSHVQDSNSSSSMVASFHQGDPSWGLAAMDDLKILKTKLCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTTDVENFPGFPEGIMGGELMDRCRKQSERFGTEIFTETVSKVATAVPLADFSRRPFKVFADSKTVEAESVIVATGAVAKRLPFPGSGDGPNGYWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEATFLTKYGSKVYIIHRRDAFRASKIMQGKALSNPKIEVIWNSTVVEAYGDSSLKGLKIKNVATGDVSDLNVSGLFFAIGHEPATKFLDGQLELDSDGYIVTKPGTTKTSVEGVFAAGDVQDKKYRQAITAAGSGCMAALDAEHYLQEVGFQEAKHELHGVKPSSKD 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0272 514 PRINTS FAD-dependent pyridine nucleotide reductase signature 178 197 - -
Lele56g0272 514 PRINTS FAD-dependent pyridine nucleotide reductase signature 335 353 - -
Lele56g0272 514 PRINTS FAD-dependent pyridine nucleotide reductase signature 446 468 - -
Lele56g0272 514 PRINTS FAD-dependent pyridine nucleotide reductase signature 287 305 - -
Lele56g0272 514 PRINTS FAD-dependent pyridine nucleotide reductase signature 419 435 - -
Lele56g0272 514 MobiDBLite consensus disorder prediction 1 28 - -
Lele56g0272 514 Pfam Pyridine nucleotide-disulphide oxidoreductase 177 481 IPR023753 GO:0016491
Lele56g0272 514 MobiDBLite consensus disorder prediction 9 28 - -
Lele56g0272 514 PRINTS Pyridine nucleotide disulphide reductase class-II signature 331 355 - -
Lele56g0272 514 PRINTS Pyridine nucleotide disulphide reductase class-II signature 288 296 - -
Lele56g0272 514 PRINTS Pyridine nucleotide disulphide reductase class-II signature 215 230 - -
Lele56g0272 514 PRINTS Pyridine nucleotide disulphide reductase class-II signature 456 474 - -
Lele56g0272 514 PRINTS Pyridine nucleotide disulphide reductase class-II signature 314 326 - -
Lele56g0272 514 PRINTS Pyridine nucleotide disulphide reductase class-II signature 236 246 - -
Lele56g0272 514 PRINTS Pyridine nucleotide disulphide reductase class-II signature 177 199 - -
Lele56g0272 514 PRINTS Pyridine nucleotide disulphide reductase class-II signature 421 442 - -
Lele56g0272 514 PRINTS Pyridine nucleotide disulphide reductase class-II signature 383 399 - -
Lele56g0272 514 SUPERFAMILY FAD/NAD(P)-binding domain 175 493 IPR036188 -
Lele56g0272 514 Gene3D - 303 431 IPR036188 -
Lele56g0272 514 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-II active site. 321 343 IPR008255 GO:0016491
Lele56g0272 514 TIGRFAM TRX_reduct: thioredoxin-disulfide reductase 177 493 IPR005982 GO:0004791|GO:0005737|GO:0019430
Lele56g0272 514 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 176 499 - -
Lele56g0272 514 Gene3D - 180 492 IPR036188 -
Lele56g0272 514 FunFam Thioredoxin reductase 307 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0272 Lele-ChrLele56 2114817 2135165 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0008 50 81199 87791 Lele56g0272 56 2114817 2135165 CCT
Lele51g0007 51 44621 54108 Lele56g0272 56 2114817 2135165 CCT
Lele53g1201 53 20794461 20796898 Lele56g0272 56 2114817 2135165 hybridization
Lele54g1171 54 17407548 17410022 Lele56g0272 56 2114817 2135165 hybridization