Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1171 ATGGATGATCTCAAGGTTCTCAAAACCAAGCTCTGCATCATCGGAAGTGGTCCTGCTGCGCATACAGCTGCCATTTACGCTGCTCGTGCGGAGCTAAAGCCTATCCTCTTCGAAGGTTGGATGGCCAACGACATTGCACCTGGTGGTCAACTCACTACAACCACCGACGTCGAGAATTTCCCCGGATTTCCTGAAGGTATCATGGGCGGGGAGCTCATGGATCGTTGCCGGAAACAATCAGAGCGATTCGGCACCAAGATCTTCACCGAGACTGTCTCCAAGGTAGATTTCTCACGCAGACCATTTAAGGTTTTCACCGATTCCAAAACCTTGGAAGCCGAATCGGTTATCGTCGCCACTGGAGCCGTCGCCAAGCGATTGCCGTTTCCAGGCTCCGGCGATGGTCCCAATGGGTACTGGAATCGGGGCATTTCGGCTTGCGCAGTTTGCGATGGTGCTGCCCCCATTTTCAGGAACAAACCGCTGGCGGTAATTGGTGGTGGGGATTCGGCTATGGAAGAAGCCACCTTCTTGACCAAGTATGGTTCTAAAGTTTATATAATTCACAGGAGGGATGTATTTAGAGCTTCCAAGATTATGCAGGGCAAAGCGTTGAGTAATCCTAAGATTGAAGTGATATGGAACTCAACCGTCGTGGAAGCATATGGAGATTCATCTTTGAAGGGACTCAAGATAAAGAATGTAGCAACTGGCGATGTGTCTGATTTGAATGTTTCCGGATTGTTCTTTGCTATTGGACACGAGCCTGCGACGAAATTCTTGGATGGTCAACTCGAACTCGATTCTGATGGCTACATTATGACTAAGCCAGGGACCACAAAGACCAGTGTTGAGGGAGTTTTTGCTGCTGGGGATGTCCAGGACAAGAAGTATAGGCAAGCTGTTACGGCGGCAGGCTCTGGGTGCATGGCTGCTTTGGATGCTGAACATTACTTGCAGGAGGTCGGGTTTCAGGAGGCCAAGTCTCCATGA 993 0.5005 MDDLKVLKTKLCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTTDVENFPGFPEGIMGGELMDRCRKQSERFGTKIFTETVSKVDFSRRPFKVFTDSKTLEAESVIVATGAVAKRLPFPGSGDGPNGYWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEATFLTKYGSKVYIIHRRDVFRASKIMQGKALSNPKIEVIWNSTVVEAYGDSSLKGLKIKNVATGDVSDLNVSGLFFAIGHEPATKFLDGQLELDSDGYIMTKPGTTKTSVEGVFAAGDVQDKKYRQAVTAAGSGCMAALDAEHYLQEVGFQEAKSP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1171 330 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-II active site. 147 169 IPR008255 GO:0016491
Lele54g1171 330 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Lele54g1171 330 PRINTS FAD-dependent pyridine nucleotide reductase signature 245 261 - -
Lele54g1171 330 PRINTS FAD-dependent pyridine nucleotide reductase signature 113 131 - -
Lele54g1171 330 PRINTS FAD-dependent pyridine nucleotide reductase signature 272 294 - -
Lele54g1171 330 PRINTS FAD-dependent pyridine nucleotide reductase signature 11 30 - -
Lele54g1171 330 PRINTS Pyridine nucleotide disulphide reductase class-II signature 209 225 - -
Lele54g1171 330 PRINTS Pyridine nucleotide disulphide reductase class-II signature 69 79 - -
Lele54g1171 330 PRINTS Pyridine nucleotide disulphide reductase class-II signature 114 122 - -
Lele54g1171 330 PRINTS Pyridine nucleotide disulphide reductase class-II signature 10 32 - -
Lele54g1171 330 PRINTS Pyridine nucleotide disulphide reductase class-II signature 157 181 - -
Lele54g1171 330 PRINTS Pyridine nucleotide disulphide reductase class-II signature 247 268 - -
Lele54g1171 330 PRINTS Pyridine nucleotide disulphide reductase class-II signature 48 63 - -
Lele54g1171 330 PRINTS Pyridine nucleotide disulphide reductase class-II signature 140 152 - -
Lele54g1171 330 PRINTS Pyridine nucleotide disulphide reductase class-II signature 282 300 - -
Lele54g1171 330 FunFam Thioredoxin reductase 133 257 - -
Lele54g1171 330 Gene3D - 129 257 IPR036188 -
Lele54g1171 330 TIGRFAM TRX_reduct: thioredoxin-disulfide reductase 10 319 IPR005982 GO:0004791|GO:0005737|GO:0019430
Lele54g1171 330 Pfam Pyridine nucleotide-disulphide oxidoreductase 10 308 IPR023753 GO:0016491
Lele54g1171 330 Gene3D - 13 318 IPR036188 -
Lele54g1171 330 SUPERFAMILY FAD/NAD(P)-binding domain 8 319 IPR036188 -
Lele54g1171 330 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 9 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1171 Lele-ChrLele54 17407548 17410022 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0008 50 81199 87791 Lele54g1171 54 17407548 17410022 CCT
Lele51g0007 51 44621 54108 Lele54g1171 54 17407548 17410022 CCT
Lele54g1171 54 17407548 17410022 Lele56g0272 56 2114817 2135165 hybridization