Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1008 ATGGATTATCACACGCAGTTTGGTGAGGTTGATGTTATGAGAAGACAAGGTAGAGATTTCTCAAGCATGGATTTTAGCTGGTGTTTGAGCTCTTCTTCTTGTTCAACTCCAATCATGTCTTCTCTTGTACATTTCCTTCTTCTTCTTTTTGCGTCTTTGGTTTGTTCTTGTCCTGTCGTCGTTTGTTCATCAGAAATGGTGAATCAGACGTTTCGCCCAGACCAAGAGGTCCACAAGTGGAGAACCATAAGAACTCGTCTCCGACAGATCAACAAGCCCCCTGTTAAGATAATTCAGAGTCCTGACGGCGATATCATAGACTGTGTTGTGTCTCATCATCAACCGGCTTTCGATCATCCCATGTTAAGAGGACAGAAACCACTGGATCCTCCGGAGAGACCAAAAGGGCATGATCCAAGGGGTTTTATGATGGGTGAGAATTTCCAGTTATGGAGGTTATCTGGAGAATCATGTCCAGAAGGAACGATTCCTATCAGAAGAACAAGAGAAGAAGATGTTTTAAGAGCAAACTCTGTTCAAAGATTTGGAAGAAAATTGCCAAAACCTGTTAGAAGAGACACCAACACAAACGGACACGAGCATGCAGTGGGGTATGTGAGTGGAGATCAGTACTATGGAGCAAAAGCAAGCATAAACGTGTGGGCCCCAAGTGTGGCGAATCAATATGAATTCAGTTTGTCTCAAATTTGGGTCATCTCTGGTTCTTTTGGGGATGATCTCAACACCATTGAAGCTGGCTGGCAGGTTAGTCCGGAGCTGTATGGAGATAATTACCCCAGATTTTTTACTTACTGGACGAGTGACGCATATCAAGCAACAGGGTGCTACAATTTGCTATGCTCTGGATTTGTTCAAACCAACAATAAAATAGCAATTGGGGCTGCAATCTCACCCACTTCTTCCTATAATGGTGGCCAATTTGATATTAGCTTAGTCATTTGGAAGGATCCGAAGCACGGGAACTGGTGGCTTGAATTCGGGTCAGGTATTCTGGTCGGGTACTGGCCATCATTTTTGTTCACGCATCTACAGGATCATGCAAGCATGGTTCAATTTGGAGGGGAAGTAGTGAATTCGGATCCTTCCGGGTCTCACACTTCGACCCAGATGGGAAGCGGGCATTTTGCGGGTGAAGGGTTTGGGAAAGCCTCATATTTTCGGAACCTACAAGTGGTGGATTGGGACAACAGCTTGATTCCGTTGACAAATCTTCGGGTCTTGGCGGATCACCCGAATTGTTATGATATCCAAGGAGGGATTAATAATGTGTGGGGGAACTACTTTTACTACGGTGGACCTGGGAAAAATGATAGGTGTCCTTAA 1344 0.4464 MDYHTQFGEVDVMRRQGRDFSSMDFSWCLSSSSCSTPIMSSLVHFLLLLFASLVCSCPVVVCSSEMVNQTFRPDQEVHKWRTIRTRLRQINKPPVKIIQSPDGDIIDCVVSHHQPAFDHPMLRGQKPLDPPERPKGHDPRGFMMGENFQLWRLSGESCPEGTIPIRRTREEDVLRANSVQRFGRKLPKPVRRDTNTNGHEHAVGYVSGDQYYGAKASINVWAPSVANQYEFSLSQIWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTSDAYQATGCYNLLCSGFVQTNNKIAIGAAISPTSSYNGGQFDISLVIWKDPKHGNWWLEFGSGILVGYWPSFLFTHLQDHASMVQFGGEVVNSDPSGSHTSTQMGSGHFAGEGFGKASYFRNLQVVDWDNSLIPLTNLRVLADHPNCYDIQGGINNVWGNYFYYGGPGKNDRCP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1008 447 MobiDBLite consensus disorder prediction 119 138 - -
Lele49g1008 447 Pfam Neprosin activation peptide 98 205 IPR025521 -
Lele49g1008 447 Gene3D - 223 337 - -
Lele49g1008 447 Pfam Neprosin 229 440 IPR004314 -
Lele49g1008 447 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 83 443 - -
Lele49g1008 447 FunFam Putative carboxyl-terminal proteinase 220 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1008 Lele-ChrLele49 6403446 6407894 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1008 49 6403446 6407894 Lele54g0975 54 16050276 16053470 CCT
Lele49g1008 49 6403446 6407894 Lele55g0481 55 3038927 3042233 CCT
Lele49g1008 49 6403446 6407894 Lele56g0467 56 3440661 3444388 CCT
Lele49g1008 49 6403446 6407894 Lele49g1008 49 6403446 6407894 ECH
Lele49g1008 49 6403446 6407894 Lele51g1029 51 6524837 6529354 hybridization
Lele49g1008 49 6403446 6407894 Lele52g1063 52 7081662 7086063 hybridization