Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0454 ATGCCAGATTCGTTGCTTTCATTTAATTGCATACTTCCGCCCTTACGTCACATGGAGTATATCGGATGTTGCAAATATTGTTTTCTGTCGGTTGAATTTGGAAGGCACGTGATTCTCACGGACCAGCCCATATATCTCGTGTTCGCGGCATCAAACTGCTTTCATTTGCGTCTTCGTTTCTGCTTCTGGCGCCTTCGGGCAAGAGCAGCGTGGAAATCTCCAGAGTTCTCAGACCAGGATTCCTCCTTTTCAAGAACTCTGCGTTACTCTTGCCGCATCTCTTTCCATTTCGATGCCCAATGGCTTCTCTGTCAGGATAACCGAATCGGAAACTGTCAGCTGAATTCCGGTACTGTTCTGCCTGCCCTTCATCCAAACATGGGCTGTTTCCACTCTAAGTCAGGAAGTAAGAGAAATTTTCCTATGGGGGAGGATCCTTTAGTTCTTGCATCAGAGACAGCCTTCAGCGTTAGTGAGGTTGAAGCACTGTTTGAGCTTTTTAAGAGCATCAGCAGTTCAGTCGTTGATGATGGATTGATCAGCAAGGAAGAGTTTCACTTGGCGATTTTCAACAATAAAAAAAAGGATAATCTCTTTGCCAGTCGGATCTTTGATATGTTTGACGTTAAGAAGAAGGGAGCCATTGATTTTGGCGATTTTGTTAGATCACTCAGTGTCTTCCACCCTAAAGCATCACAACAAGACAAGATAGATTTTTCATTTAGGCTATATGATTTGCGCAACACTGGTTTTATTGAGCGCCAAGAGGTCAAACAAATGTTAATTGCTCTTCTTTCAGAATCTGAAACGAAGTTGGCCGATGATGCATTAGAAACAATTCTTGATAAGACTTTCTTGGATGCTGATATAAATCAAGATGGGAAAATCGACAAGTCCGAATGGGAAAACTTGGTTTCCAAGAATCCATCGCTACTAAAAGTCATGACCCTACCCTACCTGAGGGACATAACGACGACCTTCCCAAGCTTTGTTTTTAATTCCAAGGTCGACGAAATTACAAAAAAAACCTAAATAGAAGAGGGATCTGAAGCTGAGCTGAGCATCTTCATCATTGTTCTCTCCTCCGTCGGGGTCGTCGCTGTTCTGAATCGGAGGAGATCAGAATCCGATGAATCAGCGGCAGCATTCATCAACTCCAACTTCGTCAACAACCGCAGCTGCACCACCCCAGAAGAAGAAGAGAAACCAACCAGGAACACCAAGCAAATCCAGATGCAGAGAAAGGCTTCTGCCCTTCGTAGGACTCCCTTGACTTCAAATATTTATGAATTTGTCTACAATTTTCGACTTCGAGCGTCCCAAGTATCATATGGTCACTGCATTCAGTTCGGTCGATCTCTACAAAATTTTCCCACTTGTAACCACTGCGAAAGATTATCTTGGGAAGGTTCTTCTCATGAAATTCTGTTGAGGAAGCTTGAAAGTTCTTTGAAGAATCATCAAGTTCAAGAAGCATGGGAATACTTTCACGATTTTAAAAGACTTTATGGCTTTCCTGCGGGTTGTCTAGTGAATCAGCTGGTTGTTCAATTATCTTACACATCTAATCATCTCTGGTTGCGAAAAGCATGTGGTCTAGCCTTGCAAATTGTCAAAGAGAAGTCAAACTTACTTCAGGCTGATACCTTAACCAAACTTGCTCTCTCTCTAGCAAGGCTGCAAATGCCAGTCCCTGCCTCGATGATTCTCAGGCTGATGTTGGAGACAGTGTGTGTACCACCTATGAATTTATTGTCGTTGATTTTTTTGCATATGGTAAAGACAGAAATTGGGTCACACATCGCATCCAATTATCTGGTTCAAGTTTCTGATTGTTTTAAATCCTTAAATGACAGAAGCGTTCATCAGGCAATGCTGGTCAAGCCAGATATAATGATATTTAACCTTGTGCTTGATGCTTGCGTGAGATTCAAATTATCATTGAAAGGTCAATGCATCATGGAGTTAATGCCAATGATAGGCACAGTGGCTGATGCACACTCAATTGTTATTATTTCACAGATTCAAGAGATGAATGGTTTGAGAGATGAAATGCAGGAATTAAGGGGCCATATTGATAGAGTATCAACTCCTTACCTTCCTCATTATTGTCAGTTCTATGATAGTTTGTTGAGCTTGCACTTCAAATTTAATGACATCCATGCTGCTGCTGAGCTTGTTTTGGGTATGAATAAACAACATGATTGTCATATCAATAAAGAGGATAGGAAACACTTGCAAAAGCTTTACCTTGTTGCCATGGGATCTCATCACCTCAAGAATGGATTGAAGATACAGTTTGATCCTGAGCTAATGCAGAAGGATTCTGTCCTTAAAGTGGAAGGCAGACAACATCTTATTTTTTATAGGGATGGAAAACTTGTCCTTAGTAACAGGGCTCTTGCCAAGTTCATCAGTCGGTACAAGAAAGATGGGAGGATTAATGAACTGTCAAAGCTTATATTGAGCATTCAAGAGGATTTGTGTTCATTAGCAGGATCCAGTTTATGTTCTGATGTGATTGGTGCGTGCATTCAGTTTGGCTGGCTTGAATCGGCTCATGATATTTTGGATGACATGGAAGCCCATGGGTCTAGAATGGGCTTAGAAGCATATGTTTCTTTACTGTCAGCATATTACAAAAGAAAAATGCATAGAGAAGCAAAGGTTCTTATAAAACAAATGAAAAGGGAAGGTTTGGATGAAAACTTTTCTGATGACACTATCAACAGACTTATTCTCGAGGCAGAAACATCAAATTCAATTGGTTTGTCTGATTTAGCGGTCACTCTGGGTCAAGTATTGAAAGATGAAGAGGAGACATTTTCTCCTACAGTTTATGAGCTTAATTCTTGTATCTACTTTTTTAGCAGGGCAAGAATGATACAAGATATGTTGAAGGCGTATAGAAGATTAAAAGAGAAAAATATTCAACCCACAGTTCAAACTTTTGCTTATATGTTGTATGGATATTCGTCTCTGGGTATGTATCGTGAAATCACAATTTTATGGGGAGACATCAAGAGATACATGAGTAATGGCGGCTTAAAGCCAAATAGAGATCTGTATGAGTTCCTATTGCTAAATTTTCTTCAAGGTGGTTATTTTGAGAGAGTGATGGAGGTCATTGGACATATGAGAGACCAAAACATATACACTGATAAGTGGATGTACAAAAGTAAGTTCCTAAGACTTCACAGGAATCTTTATAGGAGTTTAAAAGCGTCAGATTCTAGAACAGAGGCACAAAGCAAAAGGTTGGAGTATGTTCAGGCTTTTAGGAAGTGGGTGGATGAAATATGGCATACTGTTGCCTTCTTTTGTGGAAGGATGTAG 3336 0.4044 MPDSLLSFNCILPPLRHMEYIGCCKYCFLSVEFGRHVILTDQPIYLVFAASNCFHLRLRFCFWRLRARAAWKSPEFSDQDSSFSRTLRYSCRISFHFDAQWLLCQDNRIGNCQLNSGTVLPALHPNMGCFHSKSGSKRNFPMGEDPLVLASETAFSVSEVEALFELFKSISSSVVDDGLISKEEFHLAIFNNKKKDNLFASRIFDMFDVKKKGAIDFGDFVRSLSVFHPKASQQDKIDFSFRLYDLRNTGFIERQEVKQMLIALLSESETKLADDALETILDKTFLDADINQDGKIDKSEWENLVSKNPSLLKVMTLPYLRDITTTFPSFVFNSKVDEITKKTXIEEGSEAELSIFIIVLSSVGVVAVLNRRRSESDESAAAFINSNFVNNRSCTTPEEEEKPTRNTKQIQMQRKASALRRTPLTSNIYEFVYNFRLRASQVSYGHCIQFGRSLQNFPTCNHCERLSWEGSSHEILLRKLESSLKNHQVQEAWEYFHDFKRLYGFPAGCLVNQLVVQLSYTSNHLWLRKACGLALQIVKEKSNLLQADTLTKLALSLARLQMPVPASMILRLMLETVCVPPMNLLSLIFLHMVKTEIGSHIASNYLVQVSDCFKSLNDRSVHQAMLVKPDIMIFNLVLDACVRFKLSLKGQCIMELMPMIGTVADAHSIVIISQIQEMNGLRDEMQELRGHIDRVSTPYLPHYCQFYDSLLSLHFKFNDIHAAAELVLGMNKQHDCHINKEDRKHLQKLYLVAMGSHHLKNGLKIQFDPELMQKDSVLKVEGRQHLIFYRDGKLVLSNRALAKFISRYKKDGRINELSKLILSIQEDLCSLAGSSLCSDVIGACIQFGWLESAHDILDDMEAHGSRMGLEAYVSLLSAYYKRKMHREAKVLIKQMKREGLDENFSDDTINRLILEAETSNSIGLSDLAVTLGQVLKDEEETFSPTVYELNSCIYFFSRARMIQDMLKAYRRLKEKNIQPTVQTFAYMLYGYSSLGMYREITILWGDIKRYMSNGGLKPNRDLYEFLLLNFLQGGYFERVMEVIGHMRDQNIYTDKWMYKSKFLRLHRNLYRSLKASDSRTEAQSKRLEYVQAFRKWVDEIWHTVAFFCGRM 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0454 1111 ProSiteProfiles EF-hand calcium-binding domain profile. 195 230 IPR002048 GO:0005509
Lele49g0454 1111 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 868 902 IPR002885 -
Lele49g0454 1111 Pfam EF hand 281 305 IPR002048 GO:0005509
Lele49g0454 1111 SMART efh_1 236 264 IPR002048 GO:0005509
Lele49g0454 1111 SMART efh_1 199 227 IPR002048 GO:0005509
Lele49g0454 1111 SMART efh_1 280 308 IPR002048 GO:0005509
Lele49g0454 1111 PRINTS Recoverin family signature 296 316 - -
Lele49g0454 1111 PRINTS Recoverin family signature 250 268 - -
Lele49g0454 1111 PRINTS Recoverin family signature 203 224 - -
Lele49g0454 1111 ProSiteProfiles EF-hand calcium-binding domain profile. 276 311 IPR002048 GO:0005509
Lele49g0454 1111 Gene3D Tetratricopeptide repeat domain 785 922 IPR011990 GO:0005515
Lele49g0454 1111 PANTHER BNAC05G43320D PROTEIN 426 1097 - -
Lele49g0454 1111 Pfam PPR repeat 840 864 IPR002885 -
Lele49g0454 1111 Pfam PPR repeat 871 900 IPR002885 -
Lele49g0454 1111 SUPERFAMILY EF-hand 150 331 IPR011992 -
Lele49g0454 1111 Gene3D - 145 339 - -
Lele49g0454 1111 ProSiteProfiles EF-hand calcium-binding domain profile. 232 267 IPR002048 GO:0005509
Lele49g0454 1111 ProSitePatterns EF-hand calcium-binding domain. 289 301 IPR018247 -
Lele49g0454 1111 Gene3D Tetratricopeptide repeat domain 926 1104 IPR011990 GO:0005515
Lele49g0454 1111 FunFam calcineurin B-like protein 3 145 338 - -
Lele49g0454 1111 CDD EFh 236 301 IPR002048 GO:0005509
Lele49g0454 1111 MobiDBLite consensus disorder prediction 394 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0454 Lele-ChrLele49 2720126 2731922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0454 127 340 EF-hand Containing Proteins AT4G17615 77.103 1.03e-108 336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0454 49 2720126 2731922 Lele53g0297 53 2494624 2497381 CCT
Lele49g0454 49 2720126 2731922 Lele54g0296 54 2512737 2515978 CCT
Lele49g0454 49 2720126 2731922 Lele55g1191 55 18524624 18527579 CCT
Lele49g0454 49 2720126 2731922 Lele56g1143 56 14895401 14898637 CCT
Lele49g0454 49 2720126 2731922 Lele49g0454 49 2720126 2731922 ECH
Lele49g0454 49 2720126 2731922 Lele52g0489 52 2971028 2978338 hybridization