Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1191 ATGGGTTGTTTCGGCTCTAAAGTAAGAAGGCAATTTCCTGGGCATGAGGATCCTGTGACTCTTGCATCACAGACAGCTTTCACTGTTAGCGAGGACGAATTTCAGCTGGCAATTTTCAAGAACAGGAAAAGGGAGAATCTCTTTGCAAATCGGTTAGTGGCTATAGCCTATTATCATCAGGTCAAGCAAATGCTAATTGCACTTCTTTGTGAGTCTGAAATGAAGCTGGCGGATGAGACTGTAGAAGCAATTCTTGATAAGACATTTTTGGACGCTGATCTGAACAAAGATGGGAAAATAGACAAGGCTGAGTGGCAAGACTTCGTTTCAAAGAATCCCTCCCTACTAAAAATCATGACCCTACCCTACCTGAGTAAGCATTATTGTCGGTGA 393 0.4275 MGCFGSKVRRQFPGHEDPVTLASQTAFTVSEDEFQLAIFKNRKRENLFANRLVAIAYYHQVKQMLIALLCESEMKLADETVEAILDKTFLDADLNKDGKIDKAEWQDFVSKNPSLLKIMTLPYLSKHYCR 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1191 130 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Lele55g1191 130 Pfam EF hand 85 109 IPR002048 GO:0005509
Lele55g1191 130 SUPERFAMILY EF-hand 59 125 IPR011992 -
Lele55g1191 130 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Lele55g1191 130 Gene3D - 57 129 - -
Lele55g1191 130 PANTHER CALCINEURIN B 59 125 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1191 Lele-ChrLele55 18524624 18527579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1191 1 124 EF-hand Containing Proteins AT4G17615 49.479 3.35e-54 167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0454 49 2720126 2731922 Lele55g1191 55 18524624 18527579 CCT
Lele53g0297 53 2494624 2497381 Lele55g1191 55 18524624 18527579 hybridization
Lele54g0296 54 2512737 2515978 Lele55g1191 55 18524624 18527579 hybridization