Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0489 ATGGGAGCGGTTCTGTGTACTGTGCTGCCTGCCCTTCATCCAAAAATGGGCTGTTTCTACTCTAAGGAAGGAAGAAAGAGAAAGTTTCCTATGCGGGAGGACCCTTTAGTTCTTGCATCAGAGACAGCCTTTAGCGTTAGTGAGGTTGAAGCATTGTTTGAGCTTTTTAAGAGCATCAGCAGTTCAGTCGTTGATGATGGATTAATCAGCAAGGAAGAGTTTCACTTGGCGATTTTCAACAATAAAAAAAAGGATAATCTCTTTGCCAGTCGGATCTTTGATATGTTTGATGTTAAGAAGAAGGGTGCCATTGATTTTGGTGATTTTGTTAGATCACTCAGTGTCTTCCATCCTAAAGCTTCACAAGAAGACAAGATAGATTGTAATGTTTGGGATTTTCTTGCAGTTTCATTTAGGCTTTATGATTTGCGCAATAATGGTTTTATTGAGCGCCAAGAGGTCAAACAAATGTTAATTGCTCTTCTTTCAGAATCTGAAACGAAGTTGGCCGATGATGCATTAGAAAAAATTCTTGACAAGACTTTCTTGGATGCTGATATAAATCAAGATGGTAAAATAGACAAGTCCGAATGGGAAAACTTGGTAACTAAGAATCCATCGCTACTAAAAGTCATGACCCTACCCTACCTGAGGGACATAACAACGACCTTCCCAAGCTTTGTTTTTAATTCCAAGGTCGACGAAATTACAAAGGCTTTAAATGACAAAGGTGTTCATGAGGCAGTGCTGGTCAAGCCAAATACAATGACCTTTAACCTTGTGCTTGATGCTTGTGTGAGATTCAAATTATCGTTGAAAGGTCAATGCATCAAGGAGTTAATGCCAATGACAGGCACTTTGGCTGATACACACTCAATTGTCATTATTTCACAGATACTAGAGATGAATGGTTTGAGAGATGAAATGAAGGAATTAAGGGGCCATATTAATAGAGTATCAACTCCTTACCTTCTTCGTTATCGTCAGTTCTATGATAGTTCGTTGAGCTTGCACTTAAAATTTAATGTCATTAATGCTGCTACTGAGCTTGTTTTGGGGCTCTTGCCAAGTTCATCGTACAAGAAAGATGGGAGGATTAGTGAACTGTCAAAGTTTCTATTGAGCATTCAAGAGGATTTGTGTTCATTAGCAGGATCCAGTTTACGTTCTGACGTGATTGGAGCTTGCATTCAGTTTGTCTGGCTTCAATCCGCTCATGATATTTTGGATGACGTGGAAGCCTATAGGTCTAGAATGGGCTTAGAAGCATATATTTCTCTACTGTCAGCATATTTACAAAAGAAAAATGCATAG 1314 0.3904 MGAVLCTVLPALHPKMGCFYSKEGRKRKFPMREDPLVLASETAFSVSEVEALFELFKSISSSVVDDGLISKEEFHLAIFNNKKKDNLFASRIFDMFDVKKKGAIDFGDFVRSLSVFHPKASQEDKIDCNVWDFLAVSFRLYDLRNNGFIERQEVKQMLIALLSESETKLADDALEKILDKTFLDADINQDGKIDKSEWENLVTKNPSLLKVMTLPYLRDITTTFPSFVFNSKVDEITKALNDKGVHEAVLVKPNTMTFNLVLDACVRFKLSLKGQCIKELMPMTGTLADTHSIVIISQILEMNGLRDEMKELRGHINRVSTPYLLRYRQFYDSSLSLHLKFNVINAATELVLGLLPSSSYKKDGRISELSKFLLSIQEDLCSLAGSSLRSDVIGACIQFVWLQSAHDILDDVEAYRSRMGLEAYISLLSAYLQKKNA 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0489 437 PANTHER CALCINEURIN B 16 235 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lele52g0489 437 SUPERFAMILY EF-hand 39 228 IPR011992 -
Lele52g0489 437 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Lele52g0489 437 ProSitePatterns EF-hand calcium-binding domain. 186 198 IPR018247 -
Lele52g0489 437 SMART efh_1 133 161 IPR002048 GO:0005509
Lele52g0489 437 SMART efh_1 88 116 IPR002048 GO:0005509
Lele52g0489 437 SMART efh_1 177 205 IPR002048 GO:0005509
Lele52g0489 437 CDD EFh 138 198 IPR002048 GO:0005509
Lele52g0489 437 FunFam calcineurin B-like protein 3 34 235 - -
Lele52g0489 437 Pfam EF-hand domain pair 137 199 IPR002048 GO:0005509
Lele52g0489 437 Gene3D - 34 236 - -
Lele52g0489 437 ProSiteProfiles EF-hand calcium-binding domain profile. 129 164 IPR002048 GO:0005509
Lele52g0489 437 ProSiteProfiles EF-hand calcium-binding domain profile. 173 208 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0489 Lele-ChrLele52 2971028 2978338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0489 16 237 EF-hand Containing Proteins AT4G17615 73.423 1.42e-110 323
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0489 52 2971028 2978338 Lele52g0489 52 2971028 2978338 ECH
Lele49g0454 49 2720126 2731922 Lele52g0489 52 2971028 2978338 hybridization