Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g0296 ATGGGTTGTTTCAGCTCTAAAGTAAGAAGGCAATTTCCTGGGCATGAGGATCCTGTGACTCTTGCATCACAGACAGCTTTCACTGTTAGTGAGGTTGAAGCGCTGTTTGAGCTTTTTAAGAGCATCAGTGGTTCTGTTGTTGATGATGGATTAATAAGCAAGGAAGAATTTCAGCTGGCAATTTTCAAGAATAGGAAAAGGGAGAATCTCTTTGCAAATCGGATCTTTGATCTGTTTGATGTCAAAAAGAAGGGAGTCATTGATTTTGGTGACTTTGTTAGATCACTCCATGTGTTCCATCCAAATGCACCACAAGAAGACAAGATAGATTTTTCATTTAGGCTCTACGATTTGGACAGCACAGGCTTCATAGAGCGGCAAGAGGTCAAGCAAATGCTTATTGCACTTCTTTGTGAGTCTGAAATGAAGCTGGCAGATGAAACTGTAGAAGCAATTCTTGATAAGACATTTTTGGACGCTGATCTGAACAAAGATGGGAAAATAGACAAGGCTGAATGGCAAGACTTCGTTTCGAAGAATCCCTCGCTACTAAAAATCATGACTCTACCCTACCTCAGGGACATAACAACGACTTTCCCAAGTTTTGTATTTAATTCCGAGGTTGATGAAATTGCTACTTGA 642 0.4034 MGCFSSKVRRQFPGHEDPVTLASQTAFTVSEVEALFELFKSISGSVVDDGLISKEEFQLAIFKNRKRENLFANRIFDLFDVKKKGVIDFGDFVRSLHVFHPNAPQEDKIDFSFRLYDLDSTGFIERQEVKQMLIALLCESEMKLADETVEAILDKTFLDADLNKDGKIDKAEWQDFVSKNPSLLKIMTLPYLRDITTTFPSFVFNSEVDEIAT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g0296 213 CDD EFh 108 178 IPR002048 GO:0005509
Lele54g0296 213 SMART efh_1 108 136 IPR002048 GO:0005509
Lele54g0296 213 SMART efh_1 152 180 IPR002048 GO:0005509
Lele54g0296 213 SMART efh_1 71 99 IPR002048 GO:0005509
Lele54g0296 213 PANTHER CALCINEURIN B 1 210 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lele54g0296 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Lele54g0296 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lele54g0296 213 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Lele54g0296 213 PRINTS Recoverin family signature 168 188 - -
Lele54g0296 213 PRINTS Recoverin family signature 122 140 - -
Lele54g0296 213 PRINTS Recoverin family signature 75 96 - -
Lele54g0296 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Lele54g0296 213 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Lele54g0296 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Lele54g0296 213 SUPERFAMILY EF-hand 21 203 IPR011992 -
Lele54g0296 213 FunFam calcineurin B-like protein 3 17 210 - -
Lele54g0296 213 Gene3D - 17 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g0296 Lele-ChrLele54 2512737 2515978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele54g0296 1 213 EF-hand Containing Proteins AT4G17615 84.977 5.18e-135 375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0454 49 2720126 2731922 Lele54g0296 54 2512737 2515978 CCT
Lele54g0296 54 2512737 2515978 Lele55g1191 55 18524624 18527579 hybridization
Lele54g0296 54 2512737 2515978 Lele56g1143 56 14895401 14898637 hybridization