Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele43g1095 | ATGGCTTCAAAGCGCATCTTGAAGGAGCTTAAGGACTTGCAGAAAGATCCACCAACTTCATGCAGCGCAGGTCCAGTTGCTGAAGATATGTTTCATTGGCAAGCAACCATCATGGGCCCTGCTGATAGCCCATATGCCGGAGGTGTATTTCTAGTTACGATCCATTTTCCTCCAGATTATCCTTTCAAGCCCCCTAAGGTTGCGTTTAGGACTAAGGTCTTCCATCCAAACATCAATAGCAATGGTAGTATTTGCCTTGATATCCTGAAGGAACAGTGGAGCCCTGCCCTTACTATCTCTAAGGTACTGCTGTCGATCTGCTCACTGTTGACGGATCCAAATCCCGACGATCCTCTTGTACCAGAGATTGCTCACATTTACAAAACCGACCGGGCCAAGTACGAAGCCAATGCTCGCAGCTGGACTCAAAAAAATAATGAAGTGATATGCTATAGACCTTGTTTCTCACGGAATATCTCTTCATCAGTCATCTCTAATTCTACTTTTGATGTTGAATGTTATGTCACAGGTTTTCGTTCTTTCTCTACTTCGCCTTTAGCAATCGCAATCAGATCCATCACAATTCACAGGACTTTGGAAATGAGTTCTCTGAGATTGGTGGTTTTTCTGATTTCAGGCTTCAGCTGTTATAGCAATTTCCGGTTGAAGTCTCGAGCTCAGGATGATGATTCTGATCATCATGTGGAGTTGGCTTCTGGAAACGTACAACTTATTACCAGTAAAGAATCATGGGATCAAAAGTTGGAAGAAGCAACAAGGGATGGCAGAATTGTGATTGCAAATTTCAGTGCTACATGGTGTGGTCCTTGTAAGACAATTGCACCGTATTACAGCGAATTATCCGAGAAGTACCCATCTTTGATATTCTTGTTAATTGACGTGGATGAGCTAGCTGACTTTAGCACTTCATGGGACATCAAAGCCACACCAACGTTCTTCTTTCTCAAAAATGGACAACAGATTGACAAACTTGTCGGAGCCAACAAGCCAGAGCTGCAGAAGAAGATCAATGCCATTGTTGAACCAATCCCCAGTTTCTAG | 1062 | 0.4331 | MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRAKYEANARSWTQKNNEVICYRPCFSRNISSSVISNSTFDVECYVTGFRSFSTSPLAIAIRSITIHRTLEMSSLRLVVFLISGFSCYSNFRLKSRAQDDDSDHHVELASGNVQLITSKESWDQKLEEATRDGRIVIANFSATWCGPCKTIAPYYSELSEKYPSLIFLLIDVDELADFSTSWDIKATPTFFFLKNGQQIDKLVGANKPELQKKINAIVEPIPSF | 353 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele43g1095 | 353 | FunFam | Ubiquitin-conjugating enzyme 28, E2 | 1 | 147 | - | - | |
| Lele43g1095 | 353 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 147 | IPR000608 | - | |
| Lele43g1095 | 353 | SUPERFAMILY | UBC-like | 2 | 149 | IPR016135 | - | |
| Lele43g1095 | 353 | SMART | ubc_7 | 4 | 147 | - | - | |
| Lele43g1095 | 353 | CDD | UBCc | 3 | 142 | IPR000608 | - | |
| Lele43g1095 | 353 | Gene3D | Glutaredoxin | 218 | 350 | - | - | |
| Lele43g1095 | 353 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 29 | 140 | - | - | |
| Lele43g1095 | 353 | FunFam | Thioredoxin | 238 | 348 | - | - | |
| Lele43g1095 | 353 | ProSiteProfiles | Thioredoxin domain profile. | 224 | 348 | IPR013766 | - | |
| Lele43g1095 | 353 | SUPERFAMILY | Thioredoxin-like | 235 | 348 | IPR036249 | - | |
| Lele43g1095 | 353 | ProSitePatterns | Ubiquitin-conjugating (UBC) active site signature. | 74 | 89 | IPR023313 | - | |
| Lele43g1095 | 353 | CDD | TRX_family | 255 | 344 | - | - | |
| Lele43g1095 | 353 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 147 | IPR016135 | - | |
| Lele43g1095 | 353 | ProSitePatterns | Thioredoxin family active site. | 266 | 284 | IPR017937 | - | |
| Lele43g1095 | 353 | Pfam | Thioredoxin | 245 | 344 | IPR013766 | - | |
| Lele43g1095 | 353 | Pfam | Ubiquitin-conjugating enzyme | 5 | 141 | IPR000608 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele43g1095 | Lele-ChrLele43 | 19371384 | 19380567 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele43g1095 | 2 | 114 | Miscellaneous Gene Families | AT3G17000 | 36.975 | 4.50e-19 | 84.7 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele38g1281 | 38 | 23598047 | 23603140 | Lele43g1095 | 43 | 19371384 | 19380567 | CCT | |
| Lele43g1095 | 43 | 19371384 | 19380567 | Lele43g1095 | 43 | 19371384 | 19380567 | ECH | |
| Lele41g0273 | 41 | 2228557 | 2231368 | Lele43g1095 | 43 | 19371384 | 19380567 | hybridization | |
| Lele42g0268 | 42 | 2273784 | 2279732 | Lele43g1095 | 43 | 19371384 | 19380567 | hybridization |