Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0617 ATGCCTCTATATTATTCCACTAAAGTAACCACCATCGGTCCATTGAGAAGCACTATTACTGCTTTGTTTTTGAAACCCAGAGACACAAACTTCGTTCTTAAGACTCAAGACATGCAGCAAACAAAGGAGATGAATGCCACCATGCAAGGCATTGAAAGCATGAGGATTATTACTGAGAAGAAGGTGAAGGATTTGATGGCAAACCAAACGAAGAGGCTAGTAGAGGTGCCGTACACGGCGTCGCTGTCTCAGGTGATGACCACGCTGGTTGCCAACAATGTGGTGGCTGTGCCGGCAGCGGCACCTCCTGGACAGTGGATCGGGGCAGGCGGGTCGATGATCGTGGAAACAGATAAGCAAACGGGAACCCCGTGGAAGCATTACATAGGAATCGTCACCATGCTTGATATTGCAGCTCACATGGCTGGAGATGACCACTTGAGGCAGAACGATGATGGAAGTCAAGATCTTCATGAAAAAATGTCTGCGCCAGTGTCATCCATTATAGGTCACTGCGCCGAAGGTCTCAACTTATGGACTCTCAGTCCTAACACCAGTTTAATGGATTGTATGGAAGTATTTAGCAAAGGGGTGCATCGAGCTATGATACCAGTGGAGAGCCATATGCAGGAGATATCAGAAAGTGGAGGAATTGAACTCATAGAATCTTCTTCAGGCTACCAAATGCTGACTCAAATGGACGTTATCAAGTTCTTGAACCAGCACGCTGCTGATGAATTGAACCACATTATGGGACGTTCTGTTGAAGATCTGTGTGCAGTCACAGATAAAGTGTACGCCATCACTGAACGCACAAGACTTATTGACGCCATTAGGTGCTTGAAAGCTTCCATGCTCAACTCTGTTCCCATCATTCATGCCTCAGATGTTGGCCCAGATGATCATAAGCAGCTTCTTAATGGAAGAAGCAGGAAGCTGATAGGGACGTTTTCTGCGACAGACTTAAGGAGATGTGACATAGAGACACTAAGATTCTGGTTAGGCAAAAGTGCTCTAAAATTCACAGAACTGAATAATGCAACAGAAACTCAGGAGAGTATTAGTACCACGACTACAACAGGCTCGTCGTTAAGAAGAGAACTGGTGACATGCAATGCTGAAACTACGTTCTCTGATGTAATTGACAAGGCAGTGACCAGACATGTTCATAGGGTTTGGGTGGTGGACCAACCAGGTTTCCTCGTTGGAGTTGTGTCGCTCTCCGACATTATCCGGGTTATAAGGACTTGTCTGCTCAGCACAAAGTGGTAA 1272 0.4599 MPLYYSTKVTTIGPLRSTITALFLKPRDTNFVLKTQDMQQTKEMNATMQGIESMRIITEKKVKDLMANQTKRLVEVPYTASLSQVMTTLVANNVVAVPAAAPPGQWIGAGGSMIVETDKQTGTPWKHYIGIVTMLDIAAHMAGDDHLRQNDDGSQDLHEKMSAPVSSIIGHCAEGLNLWTLSPNTSLMDCMEVFSKGVHRAMIPVESHMQEISESGGIELIESSSGYQMLTQMDVIKFLNQHAADELNHIMGRSVEDLCAVTDKVYAITERTRLIDAIRCLKASMLNSVPIIHASDVGPDDHKQLLNGRSRKLIGTFSATDLRRCDIETLRFWLGKSALKFTELNNATETQESISTTTTTGSSLRRELVTCNAETTFSDVIDKAVTRHVHRVWVVDQPGFLVGVVSLSDIIRVIRTCLLSTKW 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0617 423 Gene3D - 248 416 IPR046342 -
Lele43g0617 423 SMART cbs_1 367 415 IPR000644 -
Lele43g0617 423 SMART cbs_1 264 327 IPR000644 -
Lele43g0617 423 Pfam CBS domain 365 414 IPR000644 -
Lele43g0617 423 ProSiteProfiles CBS domain profile. 364 421 IPR000644 -
Lele43g0617 423 SUPERFAMILY CBS-domain pair 55 203 IPR046342 -
Lele43g0617 423 Gene3D - 39 247 IPR046342 -
Lele43g0617 423 SUPERFAMILY CBS-domain pair 228 414 IPR046342 -
Lele43g0617 423 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 54 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0617 Lele-ChrLele43 5471806 5474546 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0617 43 5471806 5474546 Lele37g0508 37 4130745 4135326 CCT
Lele43g0617 43 5471806 5474546 Lele38g0477 38 3834577 3839207 CCT
Lele43g0617 43 5471806 5474546 Lele39g0919 39 18142688 18153757 CCT
Lele43g0617 43 5471806 5474546 Lele40g0449 40 3704304 3708878 CCT
Lele41g0782 41 17648886 17651730 Lele43g0617 43 5471806 5474546 hybridization
Lele42g0771 42 20726209 20728594 Lele43g0617 43 5471806 5474546 hybridization