Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0477 ATGGTTCTAGCTCAGTTAGGGGGGAGCATATCTCGTGCTCTCCAGCAGATGAGCAATGCCACCATAATCGATGAGAAGGTTCTCAATGAGTGTCTTAACGAGATCACCCGTGCTCTTCTTCAATCCGATGTTCAATTCAAACTCGTACGAGACATGCAGACTAACATCAAGAAGATTGTCAACCTTGACGATCTCGCTGCTGGCCACAACAAACGCAGGATCATTCAACAAGCTATTTTTAACGAACTCTGCAAAATTCTGGATCCTGGGAAGCCTTCTTTCACCCCCAAAAAAGGAAAAACAAGTGTTGTCATGTTTGTTGGTTTACAGGGATCGGGAAAAACCACAACTTGTACAAAATATGCATATTATCATCAGAAAAAAGGCTGGAAGCCTGCTCTAGTATGTGCAGATACATTCAGGGCGGGTGCTTTTGATCAACTGAAACAAAATGCCACTAAAGCTAAGATCCCTTTCTATGGAAGTTACATGGAGTCAGACCCTGTGAAAATTGCTGTTGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTCATAATTGTTGACACCAGTGGACGGCACAAACAAGAAGCTGCCCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCATTTGATCAGGCTCAAGCATTTAAACAAAGTGTTGAAGTTGGAGCCGTAATTGTTACTAAAATGGATGGCCATGCAAAGGGTGGTGGAGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCGGTCATATTCATTGGAACTGGAGAACATATGGATGAATTTGAAGTTTTTGATGTTAAACCTTTTGTCAGTCGTCTGTTAGGCATGGGTGACTGGTCTGGATTTATGGACAAGATTCATGAAGTTGTTCCCATGGACCAACAGCCTGAACTGCTTCAAAAGCTGTCAGAAGGGAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCAATCAGCCAGGTGTTCTCAATGCTTCCAGGATTTAGTGCTGAATTGATGCCAAAAGGCCGGGAGAAGGAAAGCCAAGCCAAAATTAAGCGGTACATGACAATGATGGATTCAATGACAGACGAAGAGTTAGATAGCTCAAACCCAAAGATGATGAATGAGTCACGTATGATGCGAATAGCTCGAGGGTCTGGTCGTCATGTCAAAGAAGTAATGGAGATGATGGAGGAGTACAAACGTCTCGCAAAGATTTGGAGCAAAATGAAAGGGCTCAAAATACCAAAGAAGGGAGATATGAGTGCTCTATCCCGAAATATGAATGCCCAGCACATGAGCAAAGTCCTTCCTCCACAGATGCTGAAGCAAATAGGGGGCATGGGTGGGTTACAGAATTTGATGAAGCAAATGGGTTCTTCTAAAGACATGATGGGTATGTTTGGTGGTATGGATAAGTAG 1488 0.4288 MVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVEVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTDEELDSSNPKMMNESRMMRIARGSGRHVKEVMEMMEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSSKDMMGMFGGMDK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0477 495 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Lele38g0477 495 FunFam Signal recognition particle 54 kDa subunit 90 285 - -
Lele38g0477 495 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lele38g0477 495 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Lele38g0477 495 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Lele38g0477 495 Gene3D - 91 285 IPR027417 -
Lele38g0477 495 Gene3D - 5 306 IPR042101 -
Lele38g0477 495 CDD SRP54_G 102 294 - -
Lele38g0477 495 SMART AAA_5 100 277 IPR003593 -
Lele38g0477 495 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 486 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lele38g0477 495 FunFam Signal recognition particle 54 kDa protein 311 451 - -
Lele38g0477 495 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Lele38g0477 495 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Lele38g0477 495 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lele38g0477 495 Gene3D - 312 436 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lele38g0477 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Lele38g0477 495 FunFam Signal recognition particle GTPase 5 97 - -
Lele38g0477 495 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Lele38g0477 495 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lele38g0477 495 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0477 Lele-ChrLele38 3834577 3839207 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0617 43 5471806 5474546 Lele38g0477 38 3834577 3839207 CCT
Lele44g0569 44 4433699 4436199 Lele38g0477 38 3834577 3839207 CCT
Lele42g0770 42 20723264 20724811 Lele38g0477 38 3834577 3839207 CCT
Lele38g0477 38 3834577 3839207 Lele38g0477 38 3834577 3839207 ECH
Lele38g0477 38 3834577 3839207 Lele39g0919 39 18142688 18153757 hybridization
Lele38g0477 38 3834577 3839207 Lele40g0449 40 3704304 3708878 hybridization