Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0566 ATGGGTTCGTACGGAAATCTTGCAAGGAGGGCTTTGGAAACTGAGATGCCGATCATGGTTAAAATGCAGGAATTGCTTCGAGGAGCCAAGAATGCCGTGTCCTTGGCCCAGGGGGTCGTTCATTGGCAACCTCCAAAGCAAGCATTGGACAAGGTGAAAGAACTTGTATGGGAGCCTTCAGTTAGTCGCTATGGTGCTGATGAAGGTCTTCCTGAACTTAAAGAGGCATTGATCACAAAGTTGCATCATGAAAATAATTTGCACAAGTCTTCGGTGATGGTTACAGCTGGTGCTAATCAGGCATTTGTTAATTTAGTCCTTACACTATGTGATGCGGGGGATTCAGTGGTTATGTTTGCACCTTACTATTTCAACGCTTACATGTCCTTCCAGATGACTGGCATCACCAATATACTTGTGGGTCCTGGTGACCACAAAACACTTCATCCAGATGCAGATTGGTTGGAAAGGATATTATCGGAAACTAAACCTACCCCAAAGCTTGTCACCGTTGTTAATCCGGGTAACCCAAGTGGAACCTATATTCCAGATCCTCTTCTTAAGAGGATTTCAGATCTCTGCTTGAAAGCTGGCTCTTGGCTTGTCGTTGATAATACATATGAGTATTTTATGTATGATGGTCTGAAACACACTTGTGTGGAGGGAAATCACATTGTTAACGTCTTCTCTTTCTCAAAAGCATATGGAATGATGGGGTGGCGTGTGGGATATATAGCATATCCATCTGAAGTAGAAGGTTTTGCTGCCCAGCTTCTCAAAGTCCAAGACAACATTCCTATATGTGCTTCGATAATCTCGCAGTACCTCGCCCTCCACTCTTTAGAAATTGGACCTGAGTGGGTTACAGAGAGAGTACATAGTCTCGTGAAGAACCGGGAAATCGTTCTGAAGGCGCTGTCTCCTCTCGGGGAAGGTTCTGTTAAAGGAGGAGAAGGAGCCATATACTTATGGGCAAAGCTCCCAGATGGCCATGCCGATGATTTCAAAGTTGTTCACTGGCTTGCTCATAGGCACGGGATTGCTGTTATTCCGGGAAGCGCTTGCGGGAGTCCAGGGAATCTTCGAATTTCGTTCGGAGGCTTGACAGAGAATGATTGCAAAGCTGCTGCAGAAAAGCTCAAGAGAGGCTTGGAAGAGCTTGTGAGAGATGGTTTAGTGTAG 1182 0.4552 MGSYGNLARRALETEMPIMVKMQELLRGAKNAVSLAQGVVHWQPPKQALDKVKELVWEPSVSRYGADEGLPELKEALITKLHHENNLHKSSVMVTAGANQAFVNLVLTLCDAGDSVVMFAPYYFNAYMSFQMTGITNILVGPGDHKTLHPDADWLERILSETKPTPKLVTVVNPGNPSGTYIPDPLLKRISDLCLKAGSWLVVDNTYEYFMYDGLKHTCVEGNHIVNVFSFSKAYGMMGWRVGYIAYPSEVEGFAAQLLKVQDNIPICASIISQYLALHSLEIGPEWVTERVHSLVKNREIVLKALSPLGEGSVKGGEGAIYLWAKLPDGHADDFKVVHWLAHRHGIAVIPGSACGSPGNLRISFGGLTENDCKAAAEKLKRGLEELVRDGLV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0566 393 SUPERFAMILY PLP-dependent transferases 14 386 IPR015424 -
Lele43g0566 393 Pfam Aminotransferase class I and II 33 380 IPR004839 GO:0009058|GO:0030170
Lele43g0566 393 CDD AAT_like 33 382 - -
Lele43g0566 393 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 230 243 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lele43g0566 393 PANTHER ASPARTATE AMINOTRANSFERASE 15 387 - -
Lele43g0566 393 Gene3D - 10 389 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0566 Lele-ChrLele43 5100883 5105726 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0566 43 5100883 5105726 Lele37g0464 37 3838218 3842236 CCT
Lele43g0566 43 5100883 5105726 Lele38g0431 38 3508511 3513188 CCT
Lele43g0566 43 5100883 5105726 Lele39g0961 39 18450805 18454794 CCT
Lele43g0566 43 5100883 5105726 Lele40g0407 40 3344713 3348665 CCT
Lele41g0829 41 17992786 17997390 Lele43g0566 43 5100883 5105726 hybridization
Lele42g0817 42 21083429 21088278 Lele43g0566 43 5100883 5105726 hybridization