Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0426 ATGGCAAATAGTGAGGCCTGTTGTTCTACTCAGCTTATTGATGGAGACGGAGCATTCAATGTTTCTGGAGTCGAAAAGTTCATGAAGGAAGTCAAATTGGGCGAATGTGGGCTTTCGTATGCTGTAGTTTCTATTATGGGTCCACAGAGTAGTGGGAAGAGCACGCTATTAAATAAATTGTTTAGAACCGACTTCAATGAGATGGATGCTTTTAAAGGAAGGTCTCAAACAACTAAAGGAATTTGGATGGCAAAATGTGAAGGCATAGATCCTTTTACACTTGTCATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACAGCATTTGAAAAGCAGAGTGCTCTTTTTGCTCTCGCCGTTTCAGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGTCGTGAGCAAGCTGCAAATAAGCCTCTGTTGAAAACTGTCTTTCAAGTTATGATGAGATTGTTTAGCCCACGCAAAACAACGTTGTTGTTTGTCATTCGTGATAAGACAAGAACGCCCCTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAGCCACAAGCCCACTTGGAAACTCCATTAAGTGAATTCTTTAATGTTCAAGTTGTTGCTCTTTCTAGTTTTGAAGAAAAGGAAGAGCAGTTTAAGGAGCAGGTTGCCAACTTGAGGAGACGATTCAATCATTCTACCGCTCCTGGTGGGCTTGCAGGAGATCGACGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCACAGCAAATCTGGAAGATCATTAAGGAAAACAAGGATCTTGACCTTCCTGCTCATAAGGTCATGGTTGCTACTGTGAGATGTGAAGAAATTGCCAGTGAGAAGTATGCTGCTTTCGCTGCAAATGAGGAGTGGCATCAATTGGAAGAGGCTGTGCAATCTGGCCAGGTTCCTGGATTTGGCAAAAAGCTCAGTTCAATCCTTGGCTCTTGCCTTTCAGAGTATGATTTAGAAGCCACTTATTTTGATGAAGGTGTCAGATCTGCGAAACAAAAACAGCTTCTAGAAAAATTGTTGCAACTTGTCCAACCAGCATTCCAAACTGTGATGGGACATACAAGGTCTGAAATTCTGGAAAAGTACAAGGAAGCTCTTAAAAAGGCTTTGAAAGGAGGCGAAGGGTTTTCTGCTGCTGCCAATAGATGCACAAAATCTTTTATGGCTCAGTTTGATGAAGCCTGTGCAGACGGAGTAATTGAACAAGCAAACTGGGATACATCTAAGGCAAGGGAGAAACTCCACCGCGATATTGATGCACATGTTGCTTCTGTTCGTGCAGCTAAGCTCTCTGAACTTACTTCATCATATGAGGAAAAATTGAAAGAAGCTTTATCTGGACCTATTGAAGCCCTTCTGGATGGAGCTAATAGTGAAACATGGCCAGCAATAAGGAATCTTCTCAAGCGTGAGACTGAATCCACCGTATCAGGCTTCTCTGCTGCACTTTCTGGGTTTGATATGAATGAAGAAACAAGACGGAGCATGACTACAAGTCTAGAGAATTATGCAAAGGGTTTAGTAGAAGCAAAGGCTAGGGAAGAATCTGGAAGAGTTCTGATCCGCATGAAAGACAGGTTTACAACATTGTTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGGAAGGAAGATATTCGAGCCATCACCAAGACTGCGCGCTCTGCTTGCTTGAAGTTGCTATCTGTTATGGCGGCTATTCGTTTCGAAGCTGCTACTGCTGATAATATTGAGAAAACATTAGCAGTTGCGTTGATGGATTCTCCAAGTTCTAAGAAAGATAGAAGCATTACAGCAGTTGATCCTTTGGCTTCAAGCTCCTGGCCAGAGATCCCATCTCCTAAAACCATGATCACACCGGTACAGTGCAAAAATTTGTGGAGACAATTCAAGACAGAGACAGAATATAGTGTCACTCAGGCCATTTCTGCACAGGAGGCCAACAATCGTAGTAACAACTGGTTGCCGCCTCCATGGGCAATTGTTGCTTTACTTATTCTGGGATTCAATGAATTTGTGACCCTTCTAAGAAACCCCCTGTATTTCGGTGTCATCTTCATTGGTTTTCTTCTCGGAAAAGCCCTATGGGTGCAGCTGGACATCTCCAATGAATTGCGCCATGGAATGCTTCCAGGAATGATATCCTTGTCCGCCAAGTTTGTTCCAACACTCTTGAGCATAATCAGAAACCTAGCAGAGCAGGCACAGAATCCTTCAACTAGCAACGAACCTCATCAGAGAAACCCATCTAAAACCATTCACAATTCTATCATTGCCACTAGTGATGATGACGCTGCCTCTAGTGCTTCATCTAATGTAACTTCTTTGGAAAAAGGACCCAAATATGAGTAG 2427 0.4281 MANSEACCSTQLIDGDGAFNVSGVEKFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNKLFRTDFNEMDAFKGRSQTTKGIWMAKCEGIDPFTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHLETPLSEFFNVQVVALSSFEEKEEQFKEQVANLRRRFNHSTAPGGLAGDRRGVVPASGFSFSAQQIWKIIKENKDLDLPAHKVMVATVRCEEIASEKYAAFAANEEWHQLEEAVQSGQVPGFGKKLSSILGSCLSEYDLEATYFDEGVRSAKQKQLLEKLLQLVQPAFQTVMGHTRSEILEKYKEALKKALKGGEGFSAAANRCTKSFMAQFDEACADGVIEQANWDTSKAREKLHRDIDAHVASVRAAKLSELTSSYEEKLKEALSGPIEALLDGANSETWPAIRNLLKRETESTVSGFSAALSGFDMNEETRRSMTTSLENYAKGLVEAKAREESGRVLIRMKDRFTTLFSHDSDSMPRVWTGKEDIRAITKTARSACLKLLSVMAAIRFEAATADNIEKTLAVALMDSPSSKKDRSITAVDPLASSSWPEIPSPKTMITPVQCKNLWRQFKTETEYSVTQAISAQEANNRSNNWLPPPWAIVALLILGFNEFVTLLRNPLYFGVIFIGFLLGKALWVQLDISNELRHGMLPGMISLSAKFVPTLLSIIRNLAEQAQNPSTSNEPHQRNPSKTIHNSIIATSDDDAASSASSNVTSLEKGPKYE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0426 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 249 IPR027417 -
Lele43g0426 808 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Lele43g0426 808 Gene3D - 18 245 IPR027417 -
Lele43g0426 808 MobiDBLite consensus disorder prediction 760 779 - -
Lele43g0426 808 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Lele43g0426 808 MobiDBLite consensus disorder prediction 784 808 - -
Lele43g0426 808 MobiDBLite consensus disorder prediction 784 802 - -
Lele43g0426 808 Pfam Sey1 three-helix bundle domain 323 758 IPR046758 -
Lele43g0426 808 PANTHER PROTEIN SEY1 5 776 IPR008803 -
Lele43g0426 808 Coils Coil 218 238 - -
Lele43g0426 808 CDD GBP 36 219 - -
Lele43g0426 808 Hamap Protein SEY1 [SEY1]. 9 761 IPR008803 -
Lele43g0426 808 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0426 Lele-ChrLele43 3752355 3762002 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0296 37 2504861 2507186 Lele43g0426 43 3752355 3762002 CCT
Lele41g0970 41 19161026 19174406 Lele43g0426 43 3752355 3762002 hybridization
Lele42g0939 42 22102637 22111871 Lele43g0426 43 3752355 3762002 hybridization