Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0939 ATGGCAAATAGTGAGGCCTGTCGTTCTACTCAGCTTATTGATGGAGACGGCACATTCAATGTTTCTGGAATCGAGAAGTTTATGAAGGAAGTCAAATTGGGCGAATGTGGCCTTTCCTATGCTGTAGTTTCTATTATGGGTCCACAAAGTAGTGGGAAGAGCACGCTGTTAAATAAATTGTTTAGAACCGACTTCAATGAGATGGACGCTTTTAAAGGAAGGTCTCAAACAACTAAAGGAATTTGGATGGCAAAATGTGAAGGCATAGATCCTTTTACACTTGTCATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACGGCATTTGAAAAGCAGAGTGCTCTTTTTGCTCTTGCTGTTTCAGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCATTGTTGAAAACTGTCTTTCAAGTTATGATGAGATTGTTTAGCCCACGCAAAACAACGTTGTTGTTTGTCATTCGTGATAAGACAAGAACACCCCTCGAAAGTCTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAGCCACAAGCCCACTTGGAAACTCCATTAAGTGAATTCTTTAATGTTCAAGTTGTTGCTCTCTCTAGTTTTGAAGAAAAGGAAGAGCAATTTAAGGAGCAGGTTTCCAACTTGAGGCAACGATTCAGTCATTCTATCGCTCCTGGTGGGCTTGCAGGAGATAGACGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCACAGCAAATTTGGAAGATCATTAAGGAAAACAAGGATCTGGACCTCCCTGCTCATAAGGTCATGGTTGCTACTGTAAGATGTGAAGAAATTGCAAATGAGAAGTATGCTGCTTTCGCTGCAAATGAGGAGTGGCATCAATTTAAAGAGGCTGTGCAATCTGGCCTGGTTCAAGGATTTGGCAAAAAGCTCAGTTCAATCCTCGGGTCTTGTCTGTCAGAGTATGATTTAGAAGCCACTTATTTTGATGAAGGTGTCAGATCTGCGAAACAAAAGCAGCTTCAAGAAAAACTGTTGCAGCTTGTCCAACCAACATTCCAAACTGTGCTGGGACATATAAGGTCTGAAATTCTGGAAAAGTACAAAGAAGCTCTTAACAAGGCTTTGAAAGGAGGCGAAGGGTTTTCTGCTGCCGCTAATAGATGCACAAAGTCTTTTATGGCTCAGTTTGATGAAGACTGTTCAGATGTAGTAATTGAACAAGCAAACTGGGATACATCTAAGGCAAGGGAGAAACTCCACCGTGATATTGATGCACATGTTGCTTCTGTTCGTGCGGCTAAGCTCTCTGAACTTACTTCATCATATGAGGAAAAATTGAAAGATGCTTTGTCTGGACCCATTGAAGCTCTTCTGGATGGAGCTAATAGTGAAACATGGCCAGCAATAAGGAATCTTCTCAAGCGTGAGACTGAATCCGCCGTATCAGGCTTCTCTGCTGCACTTTCTGGGTTTGATATGAGTGAAGAAACAAGACAGAACATGATAACAAGTCTAGAGGATTGTGCAAAGGGTGTAGTAGAAGCAAAGGCTAGGGAAGAATCTGGAAGAGTTCTGATCCGTATGAAGGACAGGTTTACAACATTGTTTAGCCATGATTCTGATTCGATGCCTCGTGTTTGGACGGGGAAGGAAGATATTCGAGCCATCACCAAGACTGCGCGTTATGCTTGCTTGAAGTTGCTATCTGTTATGGCGGCTATTCGTTTAGATGCTGCTGCTACTGCTGATAATATCGAGAAAACATTAACAGTTGCCTTGCTGGATCCTACAAGTTCTAAGAAAGATAGAAGCATTACAGCAGTTGATCCTTTGGCTTCAAGCTCCTGGGCAGAGATTCCATCTCCTAAGACCTTGATCACACCAGTACAGTGCAAAAATTTGTGGAGACAATTCAAGGCAGAGACTGAATACAGTGTCACTCAAGCCATTTCTGCCCAGGAGGCCAACAATCGTAGTAACAACTGGTTACCACCTCCATGGGCAATTGTTGCTTTACTTATTCTGGGATTCAATGAATTTGTGACACTTCTAAGAAACCCCCTGTATTTCGGTGTCATCTTCATTGGTTTTCTTCTGGGAAAAGCCCTATGGGTGCAGCTGGACATCTCGAATGAATTTCGCCATGGAATGCTTCCAGGAATGATATCCTTGTCTGCAAAGTTTCTTCCAACACTGTTGAGCATTATCAGAAACCTAGCAGAGCAGGCGCAGAATCCTTCAACTAACAGCAACGAACCTCATCAGAGAAACCCATCTAAAACCAATCACAATTCTATCACTTCCAGTAGCGATGATGACACTGTCTCTAGTGCTTCATCTAATGTAACTTCTTTGGACAAAGGACCCAAATATGAGTAG 2433 0.4254 MANSEACRSTQLIDGDGTFNVSGIEKFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNKLFRTDFNEMDAFKGRSQTTKGIWMAKCEGIDPFTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLESLEPVLREDIQKIWDSVPKPQAHLETPLSEFFNVQVVALSSFEEKEEQFKEQVSNLRQRFSHSIAPGGLAGDRRGVVPASGFSFSAQQIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYAAFAANEEWHQFKEAVQSGLVQGFGKKLSSILGSCLSEYDLEATYFDEGVRSAKQKQLQEKLLQLVQPTFQTVLGHIRSEILEKYKEALNKALKGGEGFSAAANRCTKSFMAQFDEDCSDVVIEQANWDTSKAREKLHRDIDAHVASVRAAKLSELTSSYEEKLKDALSGPIEALLDGANSETWPAIRNLLKRETESAVSGFSAALSGFDMSEETRQNMITSLEDCAKGVVEAKAREESGRVLIRMKDRFTTLFSHDSDSMPRVWTGKEDIRAITKTARYACLKLLSVMAAIRLDAAATADNIEKTLTVALLDPTSSKKDRSITAVDPLASSSWAEIPSPKTLITPVQCKNLWRQFKAETEYSVTQAISAQEANNRSNNWLPPPWAIVALLILGFNEFVTLLRNPLYFGVIFIGFLLGKALWVQLDISNEFRHGMLPGMISLSAKFLPTLLSIIRNLAEQAQNPSTNSNEPHQRNPSKTNHNSITSSSDDDTVSSASSNVTSLDKGPKYE 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0939 810 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Lele42g0939 810 Hamap Protein SEY1 [SEY1]. 9 762 IPR008803 -
Lele42g0939 810 Pfam Sey1 three-helix bundle domain 323 759 IPR046758 -
Lele42g0939 810 MobiDBLite consensus disorder prediction 761 804 - -
Lele42g0939 810 Gene3D - 14 245 IPR027417 -
Lele42g0939 810 MobiDBLite consensus disorder prediction 761 810 - -
Lele42g0939 810 CDD GBP 36 242 - -
Lele42g0939 810 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Lele42g0939 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 276 IPR027417 -
Lele42g0939 810 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Lele42g0939 810 PANTHER PROTEIN SEY1 5 780 IPR008803 -
Lele42g0939 810 Coils Coil 218 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0939 Lele-ChrLele42 22102637 22111871 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0296 37 2504861 2507186 Lele42g0939 42 22102637 22111871 CCT
Lele42g0939 42 22102637 22111871 Lele43g0426 43 3752355 3762002 hybridization
Lele42g0939 42 22102637 22111871 Lele44g0418 44 3093523 3097372 hybridization