Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0970 ATGTCCCAGAATGGGATTCTAATGCAGGGCAGATATGATTATATGAACTTTGGACCCTCCAATGAGCTAACTTCTCTAAGTTTCATGTCTCAAACAACTAAAGGAATTTGGATGGCAAAATGTGAAGGCATAGATCCTTTTACACTTGTCATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACAGCATTTGAAAAGCAGAGTGCTCTTTTTGCTCTTGCCGTTTCAGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCTCTGTTGAAAACTGTCTTTCAAGTTATGATGAGATTGTTTAGCCCACGCAAAACAACGTTGTTGTTTGTCATTCGTGATAAGACACGAACACCCCTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAGCCACAAGCCCACTTGGAAACTCCATTAAGTGAATTCTTTAATGTTCAAGTTGTTGCTCTTTCTAGTTTTGAAGAAAAGGAAGAGCAGTTTAAGGAGCAGGTTACCAACTTGAGGCAACGATTCAATCATTCTACTGCTCCTGGTGGGCTTGCAGGAGATCGACGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCACAGCAAATTTGGAAGATCATTAAGGAAAACAAGGATCTTGACCTTCCTGCTCATAAGGTCATGGTTGCTACTGTGAGATGTGAAGAAATTGCCAATGAGAAGTATGCTGCTTTCGCTGCAAATGAGGAGTGGCATCAATTGGAAGAGGCTGTGCAATCTGGCCAGGTTCCTGGATTTGGCAAAAAGCTCAGTTCAATCCTTGGCTCTTGTCTTTCAGAGTATGATTTAGAAGCCACTTATTTTGATGAAGGTGTCAGATCTGCGAAACAAAAGCAGCTTCAAGAAAAATTGTTGCAACTTGTCCAACCAGTAGTCCAAACTGTGCTGGGACATATAAGGTCTGAAATTCTGGAAAAGTACAAGGAAGCTCTTAACAAGGCTTTGAAAGGAGGGGAAGGGTTTTCTGCTGCTGCTAATAGATTCACAAAGTCTTTTATGACTCAGTTTGATGAAGCCTGTGCAGACGTAGTAATTGAACAAGGAAACTGGGATACATCTAAGGCAAGGGAGAAACTCCACCGCGATATTGATGCACATGTTGCTTTGGTTCGTGCAGCTAAGCTCTCTGAACTTACTTCATCATATGAGGAAAAATTGAAAGAAGCTTTATCTGGACCTATTGAAGCCCTTCTGGATGGAGCTAATAGTGAAACATGGCCCGCAATAAGGAATCTTCTCAAGCGTGAGACTGAATCTGCCGTATCAGGCTTCTCTGCTGCACTTTCTGGGTTTGATATGAATGAAGAAACAAGACGGAACATGACTATAAGTCTAGAGGATTATGCAAAGGGTGTAGTAGAAGTAAAGGCTAGGGAAGAATCTGGAAGAGTTCTGATCCGCATGAAAGACAGGTTTACAACATTGTTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGGAAGGAAGATATTCGAGCCATCACCAAGACTGCGCGCTCTGCTTGCTTGAAGTTGCTATCTGTTATGGCGGCTATTCGTTTAGAAGCTGCTACTGCTGATGATATTGAGAAAACATTAGCAGTTGCGTTGATGGATTCTCCAAGTTCTAAGAAAGATAGAAGCATTACAGCAGTTGATCCTTTGGCTTCAAGCTCCTGGCCAGAGATCCCATCTCCTAAAACCATGATCACACCAGTACAGTGCAAAAATTTGTGGAGACAATTCAAGACAGAGACTGAATATAGTGAGGCCAACAATCGTAGTAACAACTGGTTACCGCCTCCATGGGCAATTGTTGCTTTACTTATTCTGGGATTCAATGAATTTGTGACCCTTCTAAGAAATCCCCTGTATTTCGGTGTTATCTTCATTGGTTTTCTTCTCGGAAAAGCCCTATGGGTGCAGCTGGACATCTCCAATGAATTCCGCCATGGAATGCTTCCAGGAATGATATCCTTGTCTGCCAAGTTTCTTCCGACACTGTTGAGCATAATCAGAAACCTAGCAGAGCAGGCACAGAATCCTTCAACTAACAACGAACCTCATCAGAGAAACCCATCTAAAACCATTCACAATTCTACCATTGCCACTAGTGATGATGACGCTGCCTCTAGTGCTTCATCTAATGTAACTTCTTTGGACAAAGGACCCAAATATGAGTAG 2268 0.4233 MSQNGILMQGRYDYMNFGPSNELTSLSFMSQTTKGIWMAKCEGIDPFTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHLETPLSEFFNVQVVALSSFEEKEEQFKEQVTNLRQRFNHSTAPGGLAGDRRGVVPASGFSFSAQQIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYAAFAANEEWHQLEEAVQSGQVPGFGKKLSSILGSCLSEYDLEATYFDEGVRSAKQKQLQEKLLQLVQPVVQTVLGHIRSEILEKYKEALNKALKGGEGFSAAANRFTKSFMTQFDEACADVVIEQGNWDTSKAREKLHRDIDAHVALVRAAKLSELTSSYEEKLKEALSGPIEALLDGANSETWPAIRNLLKRETESAVSGFSAALSGFDMNEETRRNMTISLEDYAKGVVEVKAREESGRVLIRMKDRFTTLFSHDSDSMPRVWTGKEDIRAITKTARSACLKLLSVMAAIRLEAATADDIEKTLAVALMDSPSSKKDRSITAVDPLASSSWPEIPSPKTMITPVQCKNLWRQFKTETEYSEANNRSNNWLPPPWAIVALLILGFNEFVTLLRNPLYFGVIFIGFLLGKALWVQLDISNEFRHGMLPGMISLSAKFLPTLLSIIRNLAEQAQNPSTNNEPHQRNPSKTIHNSTIATSDDDAASSASSNVTSLDKGPKYE 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0970 755 MobiDBLite consensus disorder prediction 708 749 - -
Lele41g0970 755 Coils Coil 173 193 - -
Lele41g0970 755 Pfam Sey1 three-helix bundle domain 278 705 IPR046758 -
Lele41g0970 755 MobiDBLite consensus disorder prediction 708 755 - -
Lele41g0970 755 Gene3D - 16 200 IPR027417 -
Lele41g0970 755 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 1 207 IPR030386 GO:0005525
Lele41g0970 755 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 11 228 - -
Lele41g0970 755 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 29 236 - -
Lele41g0970 755 PANTHER PROTEIN SEY1 29 723 IPR008803 -
Lele41g0970 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 204 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0970 Lele-ChrLele41 19161026 19174406 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0296 37 2504861 2507186 Lele41g0970 41 19161026 19174406 CCT
Lele41g0970 41 19161026 19174406 Lele43g0426 43 3752355 3762002 hybridization
Lele41g0970 41 19161026 19174406 Lele44g0418 44 3093523 3097372 hybridization