Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0465 ATGATACGTCATTTGACTTATCATCTCGCAAAGAGAGAGAGAGAGAGAGCTTGTTTTCTGAGGAGCGAGAAAGCGAGTATAATAGGCCATTCAGGAGAGAGAAAATTCAGGAGAGAGAAAGCTCCCCCCCCCCTTCTGCTCTGTTCTGGTGCGTTTGTTTTCTCGGGCTTTGAAGGTGGGAGACGTGAGAAGTTGAGAACTTCCTCAGGAATCACTCTAATTTCCGAATCTGTTGCTTTAGAGTCGACAGGCTTTTCCATATCTAGTTTGCTATTGCTCATACTTGTACCTTTCTTTCTAATCGAAGCTGGGGAGGCTACGATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATTTTACAGTTTCTGGAAGAGGAAAAGTTCAAAGAAACCGTTCACAAGCTGGAACAAGAGTCTGGATTTTTCTTTAACATGAAATATTTTGAGGATGAAGTACACAATGGCAATTGGGATGAGATTGAAAGATATCTCTCTGGTTTCACAAAAGTTGATGATAATCGGTATTCGATGAAGATATTTTTTGAGATTAGGAAGCAGAAATACCTTGAAGCATTAGATAAGCACGACAGGTCCAAGGCTGTAGAAATATTGGTGAAGGATTTGAAAGTTTTTTCCACATTCAATGAAGACCTATTCAAGGAAATCACACAGCTCTTGACTTTGGAGAATTTCAGGGAAAATGAGCAATTGTCAAAGTACGGTGATACAAAGTCTGCAAGGGCAATCATGTTGATTGAACTTAAAAAGCTGATTGAAGCAAATCCCTTATTCCGCGACAAATTGCAGTTTCCCAACCTTAAAAACTCAAGATTACGAACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAGCTCTGTAAGAATCCGAGGCCAAATCCAGATATTAAAACTCTTTTTGTGGATCACTCATGTGGCCAGCCAAATGGTGCACGGGCTCCATCACCTGCTAATAATCCCCTACTTGGATCCTTACCAAAGGCTGGAGGCTTTCCTCCTCTAGGTGCACATGGGCCATTTCAACCTACCACAGCACCCGTGCCAGCACCCCTGGCAGGCTGGATGTCAAATCCTACCCCTGTAGCTCATGCTGCAGTTTCTGGAGGAGGAGCTATAGGTCTTGGCGGTCCTTCAATCTCTGTTGCTTTGAAGCACCCAAGGACCCCTCCAACTAACCCATCTGTTGACTACCCATCTGGAGATTCTGACCACGTATCTAAGAGATCAAGGCCAATGGGAATGCCAGATGAGGTGAATCTATCTGTTAATGTGTTGCCAGCTGCATTATCAGGTCACGGGCATGGCCAATCTTTCAATGCACCTGATGACTTACCAAAGACTGTTACACGAACTCTGAATCAGGGTTCGGCTCCAATGAGCATGGACTTTCATCCAGTTCAACAGAGTTTACTTCTTGTTGGTACCAACGTGGGGGACATTTCTTTGTGGGAAGTGGGCTCTCGAGAGAGATTGGTCTCAAGGAACTTTAAAGTTTGGGATCTAAGGCCCTGCTCAATGCCACTCCAGGCTGCTCTTGTCAAAGATCCCAGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGACATATTGTTCAGATATACTCATACCATGGTGGGGATGATGTGCGCCAACACCTGGAGATTGATGCTCATGTTGGTGGAGTGAATGATATTGCATTTTCCCACCCAAATAAGCAATTGTGTGTCATAACTTGTGGTGACGACAAGACCATTAAGGTTTGGGATGGTGCTACTGGTGCAAAACAGTTTACTTTTGAAGGTCACGAGGCTCCAGTCTATTCTGTTTGTCCTCATTACAAAGAAAACATTCAGTTTATATTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGTTCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACAACCATGGCTTACAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCAATTGTTGAATGGAATGAAAGTGAAGGAGCTGTCAAAAGGACATATCAAGGATTTCGTAAAAGATCATCAGGCGTTGTGCAATTTGATACAACAAAAAATCGATATTTGGTTGCTGGTGATGATTTCTCCATTAAATTCTGGGATATGAACAACGTTCAACTTTTGACAACTATTGATGCTGATGGAGGTCTACCTGCAAGCCCACGTATCCGTTTCAACAAGGATGGAACCCTCTTAGCTGTGTCTGCCAATGAGAATGGAATTAAAATTTTAGCCAATGCAGATGGAATAAGATTGTTACGAACATTAGAGAATTCTGCATTCGAGGCATCGAGAACATCTGAAGCCATAAAGCCCGCAATAAGTCCAATTTCAGCTGCTGCTGCAGCTGCAAGTAGTGCTGCACTTGCAGAGAGGGGCTCATCTGTAGTAGCTATTGCAGGAATGAATGAGGATGCTCGGAATATGGGTGATGTTAAACCTAGAATTGCCGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCTGAAAATCTGAGGGTGACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCAATACTGGCATTATCATCAGATGCAATTCATTTGCTCTGGAAATGGCAGCGAAGTGACCGAAATTCTTCTAGCAAGGCCACTGCCAGTGTCTCACCACAATTGTGGCAACCATCGAGCGGCATCCTGATGACCAATGACATTTCTGACAGCAATCCTGAGGACGCTGTGCCTTGCTTTGCTCTCTCCAAAAATGATTCGTATGTGATGTCAGCATCAGGGGGGAAGATTTCGCTGTTCAATATGATGACTTTTAAGACGATGACAACTTTCATGCCTCCACCACCTGCAGCAACTTTTCTCGCTTTCCACCCTCAGGATAACAATATTATAGCCATTGGGATGGATGATTCCACCATTCAGATATATAATGTCCGTGTGGATGAGGTTAAAAGTAAACTTAAGGGTCACACCAAAAGAATAACCGGCCTTGCCTTTTCTCATGCATTGAATGTGTTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGAAAAGCAGAAGAGTAGATTCTTGCAGATTTCTGCAGGGAGGACTCCAACGGCACAGACAGAAACCCGTGTACAGTTTCACCAGGATCAGATACATTTCTTGGTTGTACATGAAACTCAGCTTGCCATATATGAAACAACAAAACTAGAATGTATAAAGCAGTGGTTTCCAAGAGAGTCTACTGCACCTATATCAGCTGCAACTTTCTCGTGTGATAGCCAGCTGATATATGCCAGCTTTTTAGACGCAACAGTTTATGTCTTCAGTGCATTAAACCTCAGATTACGCTGTTGTATCAATCCTTCTTCTTATCTTTCTGCCGGTGTCAGTTCCAATGTACAACCACTAGTGGTGGCAGCACATCCACAAGAACCAAATCAGTTTGCTTTAGGCTTGTCAGATGGCGGAGTTCATGTGTTTGAACCGCTCGAGTCTGAAGGCAAGTGGGGTGTGCCTCCTCCCATTGAGAATGGATCAGCAAGTAATGCGGTAGCTTCTTCAGTTGTAGCTTCTTCGGATCAAGCCCAGAGATAA 3720 0.4336 MIRHLTYHLAKRERERACFLRSEKASIIGHSGERKFRREKAPPPLLLCSGAFVFSGFEGGRREKLRTSSGITLISESVALESTGFSISSLLLLILVPFFLIEAGEATMSSLSRELVFLILQFLEEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEIERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLIELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTTAPVPAPLAGWMSNPTPVAHAAVSGGGAIGLGGPSISVALKHPRTPPTNPSVDYPSGDSDHVSKRSRPMGMPDEVNLSVNVLPAALSGHGHGQSFNAPDDLPKTVTRTLNQGSAPMSMDFHPVQQSLLLVGTNVGDISLWEVGSRERLVSRNFKVWDLRPCSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDGATGAKQFTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSSGVVQFDTTKNRYLVAGDDFSIKFWDMNNVQLLTTIDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGIRLLRTLENSAFEASRTSEAIKPAISPISAAAAAASSAALAERGSSVVAIAGMNEDARNMGDVKPRIAEESNDKSKIWKLTEINEPSQCRSLKLPENLRVTKISRLIYTNSGNAILALSSDAIHLLWKWQRSDRNSSSKATASVSPQLWQPSSGILMTNDISDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQLCVWNTDGWEKQKSRFLQISAGRTPTAQTETRVQFHQDQIHFLVVHETQLAIYETTKLECIKQWFPRESTAPISAATFSCDSQLIYASFLDATVYVFSALNLRLRCCINPSSYLSAGVSSNVQPLVVAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSASNAVASSVVASSDQAQR 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0465 1239 Gene3D - 913 1204 IPR015943 GO:0005515
Lele40g0465 1239 Pfam WD domain, G-beta repeat 564 598 IPR001680 GO:0005515
Lele40g0465 1239 Pfam WD domain, G-beta repeat 1025 1058 IPR001680 GO:0005515
Lele40g0465 1239 FunFam Topless-related protein 1 431 649 - -
Lele40g0465 1239 SMART WD40_4 601 642 IPR001680 GO:0005515
Lele40g0465 1239 SMART WD40_4 1110 1151 IPR001680 GO:0005515
Lele40g0465 1239 SMART WD40_4 976 1016 IPR001680 GO:0005515
Lele40g0465 1239 SMART WD40_4 691 731 IPR001680 GO:0005515
Lele40g0465 1239 SMART WD40_4 512 551 IPR001680 GO:0005515
Lele40g0465 1239 SMART WD40_4 936 973 IPR001680 GO:0005515
Lele40g0465 1239 SMART WD40_4 451 490 IPR001680 GO:0005515
Lele40g0465 1239 SMART WD40_4 645 688 IPR001680 GO:0005515
Lele40g0465 1239 SMART WD40_4 1019 1058 IPR001680 GO:0005515
Lele40g0465 1239 SMART WD40_4 557 598 IPR001680 GO:0005515
Lele40g0465 1239 ProSiteProfiles LIS1 homology (LisH) motif profile. 111 143 IPR006594 GO:0005515
Lele40g0465 1239 Gene3D - 427 624 IPR015943 GO:0005515
Lele40g0465 1239 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 108 1221 IPR027728 GO:0006355
Lele40g0465 1239 MobiDBLite consensus disorder prediction 1221 1239 - -
Lele40g0465 1239 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 607 IPR001680 GO:0005515
Lele40g0465 1239 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 630 1156 IPR011047 -
Lele40g0465 1239 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 456 760 - -
Lele40g0465 1239 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 1086 1222 IPR011044 -
Lele40g0465 1239 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1026 1058 - -
Lele40g0465 1239 SMART ctlh 141 199 IPR006595 -
Lele40g0465 1239 MobiDBLite consensus disorder prediction 392 418 - -
Lele40g0465 1239 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 141 199 IPR006595 -
Lele40g0465 1239 Coils Coil 1239 1239 - -
Lele40g0465 1239 MobiDBLite consensus disorder prediction 1210 1239 - -
Lele40g0465 1239 FunFam Topless-related protein 3 845 1079 - -
Lele40g0465 1239 ProSiteProfiles Trp-Asp (WD) repeats profile. 1026 1067 IPR001680 GO:0005515
Lele40g0465 1239 Gene3D - 625 912 IPR015943 GO:0005515
Lele40g0465 1239 SMART Lish 111 143 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0465 Lele-ChrLele40 3840044 3848691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0465 562 775 Miscellaneous Gene Families AT5G08390 23.853 1.98e-06 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0905 39 17992480 18000124 Lele40g0465 40 3840044 3848691 ECH
Lele40g0465 40 3840044 3848691 Lele40g0465 40 3840044 3848691 ECH
Lele37g0521 37 4275672 4285541 Lele40g0465 40 3840044 3848691 hybridization
Lele38g0493 38 3986833 3996241 Lele40g0465 40 3840044 3848691 hybridization