Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0493 ATGAAAGTCGACAGGCTTTTCATATCTAGTTTGCTATTGCTCATCCTTGTACCTTTCTTTCTAATCGAAGCTGGGGAGGCTACGATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATTTTACAGTTTCTGGAAGAGGAAAAGTTCAAAGAGACCGTTCACAAGCTTGAACAAGAGTCTGGATTTTTCTTTAACATGAAATATTTTGAGGATGAAGTACACAATGGCAATTGGGATGAGGTTGAAAGATATCTCTCTGGTTTCACAAAAGTTGATGATAATCGGTACTCGATGAAGATATTTTTTGAGATTAGGAAGCAGAAATACCTTGAAGCATTAGATAAGCACGACAGGTCCAAGGCTGTAGAAATATTGGTGAAGGATTTGAAAGTTTTTTCCACATTCAATGAAGACCTATTCAAGGAAATCACACAGCTCTTGACTTTGGAGAATTTCAGGGAAAATGAGCAATTGTCAAAGTACGGTGATACAAAGTCTGCAAGGGCAATCATGTTGATTGAACTTAAAAAGCTGATTGAAGCAAATCCCTTATTCCGCGAGAAATTGCAGTTTCCCAACCTTAAAAACTCAAGATTACGAACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAGCTCTGTAAGAATCCGCGGCCAAATCCAGATATTAAAACTCTTTTTGTGGATCACTCATGTGGACAGCCAAATGGTGCACGGGCTCCATCACCTGCTAATAATCCACTACTTGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCTCTAGGTGCACATGGGCCATTTCAACCTACCACAGCACCCGTGCCAGCACCCCTGGCAGGCTGGATGTCAAATCCTACCCCTGTAGCTCATGCTGCAGTTTCTGGAGGAGGAGCTATAGGTCTTGGCGGTCCTTCAATCTCTGTTGCTTTGAAGCACCCAAGGACCCCTCCAACTAACCCATCTGTTGACTACCCATCTGGAGATTCTGACCACGTATCTAAGAGACCAAGGCCAATGGGAATGCCAGATGAGGTGAATCTATCTGTTAATGTGTTGCCAGCTGCATTACCAGGTCACGGGCCTGGCCAATCTTTCAATGCACCTGATGACTTACCCAAGACTGTTACACGAACTCTGAATCAGGGTTCGGTTCCAATGAGCATGGACTTTCATCCAGTTCAACAGAGTTTACTTCTTGTTGGTACCAACGTGGGGGACATTTCTTTGTGGGAAGTGGGCTCTCGAGAGAGATTGGTCTCAAGGAACTTTAAAGTTTGGGATCTAAGTGCCTGCTCAATGCCACTCCAGGCTGCTCTTGTCAAAGATCCCAGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGATATATTGTTCAGATATACTCATACCATGGTGGGGATGATGTGCGCCAACACCTGGAGATTGATGCTCATGTTGGTGGAGTGAATGATATTGCATTTTCCCACCCAAATAAGCAATTGTGTGTCATAACTTGTGGTGATGACAAGACCATTAAGGTTTGGGATGCTGCTACTGGTGCAAAACAGTTTACTTTTGAAGGTCACGAGGCTCCAGTCTATTCTGTTTGTCCTCATTACAAAGAAAACATTCAGTTTATATTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGTTCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACAACCATGGCTTACAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCAATTGTTGAATGGAATGAAAGTGAAGGTGCTGTCAAAAGGACATATCAAGGATTTCGTAAAAGATCATTGGGCGTTGTGCAATTTGATACAACAAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATTAAATTCTGGGATATGAACAACGTTCAACTTTTGACAACTATTGATGCTGATGGAGGTCTACCCGCAAGCCCACGTATCCGTTTCAACAAGGATGGAACCCTCTTAGTTGTTTCTGCGAATGAGAATGGAATTAAAATTTTAGCCAATGCAGATGGAATAAGATTGTTACGAACATTAGAGAATTCTGCATTCGAGGCATCAAGAACATCTGAAGCCATAAAGCCCGCAATAAATCCAATTTCAGCTGCTGCTGCAAGTAGTGCTGCACTTGCAGAGAGGGGCTCATCTGTAGTAGCTATTGCCGGAGTGAATGGGGATGCTCGGAATATGGGTGATGTTAAACCTAGAATTACCCAAGAATCCAATGACAAGTCAAAGATATGGAAGCTGACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCTGAAAATCCGAGAGTAACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCAATTCTGGCATTATCATCAGATGCAATTCATTTGCTCTGGAAATGGCAGCGAAGTGACCGAAATTCTTCTGGCAAGGCCACTGCCAGTGTCTCACCACACTTGTGGCAACCATCGAGCGGCATCCTGATGACCAATGACATTTCTGACAACAATCCTGAGGATGCTGTGCCTTGCTTTGCTCTCTCCAAAAATGATTCGTATGTGATGTCAGCATCAGGAGGGAAGATTTCACTATTCAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCACCACCTGCAGCAACCTTTCTGGCTTTCCACCCTCAGGATAACAATATTATAGCTATTGGGATGGATGATTCCACCATTCAGATATACAATGTCCGTGTGGATGAGGTTAAAAGTAAACTTAAAGGTCACACCAAAAGAATAACCGGCCTTGCCTTTTCTCATGCATTGAATGTGTTAGTGTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGACAAGCAGAAGAGTAGATTCTTGCAGATTTCTGCAGGGAGGACTCCAACGGCACAGACAGAAACCCGTGTACAGTTGCACCAGGATCAGATACACTTCTTGGTTGTACATGAAACTCAGCTTGCCATATATGAAACAACAAAACTGGAATGTCTAAACCAGTGGTTTCCAAGAGAGTCTACTGCACCTATATCAGCTGCAACTTTCTCGTGTGATAGCCAGCTGATATATGCCAGCTTTTTGGATGCAACAGTTTATGTCTTCAGTGCATCAAACCTCAGATTACGCTGTTGTATCAATCCTTCTTCTTATCTTTCTGCCGGTGTCAGTTCCAATGTACAACCACTAGTGGTGGCAGCACATCCACAAGAACCAAATCAGTTTGCTTTAGGCTTGTCAGACGGCGGAGTTCATGTGTTTGAGCCGCTCGAGTCTGAAGGCAAGTGGGGTGGGCCTCCTCCCATTGAGAATGGATCAGCAAGTAATGCGGTAGCTTCTTCAGTTGTAGCTTCTTCGGATCAAGCCCAGAGATAA 3477 0.4328 MKVDRLFISSLLLLILVPFFLIEAGEATMSSLSRELVFLILQFLEEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLIELKKLIEANPLFREKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTTAPVPAPLAGWMSNPTPVAHAAVSGGGAIGLGGPSISVALKHPRTPPTNPSVDYPSGDSDHVSKRPRPMGMPDEVNLSVNVLPAALPGHGPGQSFNAPDDLPKTVTRTLNQGSVPMSMDFHPVQQSLLLVGTNVGDISLWEVGSRERLVSRNFKVWDLSACSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRYIVQIYSYHGGDDVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAATGAKQFTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMNNVQLLTTIDADGGLPASPRIRFNKDGTLLVVSANENGIKILANADGIRLLRTLENSAFEASRTSEAIKPAINPISAAAASSAALAERGSSVVAIAGVNGDARNMGDVKPRITQESNDKSKIWKLTEINEPSQCRSLKLPENPRVTKISRLIYTNSGNAILALSSDAIHLLWKWQRSDRNSSGKATASVSPHLWQPSSGILMTNDISDNNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQLCVWNTDGWDKQKSRFLQISAGRTPTAQTETRVQLHQDQIHFLVVHETQLAIYETTKLECLNQWFPRESTAPISAATFSCDSQLIYASFLDATVYVFSASNLRLRCCINPSSYLSAGVSSNVQPLVVAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGGPPPIENGSASNAVASSVVASSDQAQR 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0493 1158 FunFam Topless-related protein 3 764 998 - -
Lele38g0493 1158 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 945 977 - -
Lele38g0493 1158 Gene3D - 573 831 IPR015943 GO:0005515
Lele38g0493 1158 Pfam WD domain, G-beta repeat 485 519 IPR001680 GO:0005515
Lele38g0493 1158 Pfam WD domain, G-beta repeat 944 977 IPR001680 GO:0005515
Lele38g0493 1158 MobiDBLite consensus disorder prediction 1124 1158 - -
Lele38g0493 1158 Gene3D - 832 1123 IPR015943 GO:0005515
Lele38g0493 1158 Gene3D - 361 572 IPR015943 GO:0005515
Lele38g0493 1158 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 661 IPR001680 GO:0005515
Lele38g0493 1158 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 62 120 IPR006595 -
Lele38g0493 1158 SUPERFAMILY Putative isomerase YbhE 376 479 - -
Lele38g0493 1158 ProSiteProfiles Trp-Asp (WD) repeats profile. 945 977 IPR001680 GO:0005515
Lele38g0493 1158 SUPERFAMILY WD40 repeat-like 443 828 IPR036322 GO:0005515
Lele38g0493 1158 SMART WD40_4 855 892 IPR001680 GO:0005515
Lele38g0493 1158 SMART WD40_4 372 411 IPR001680 GO:0005515
Lele38g0493 1158 SMART WD40_4 522 563 IPR001680 GO:0005515
Lele38g0493 1158 SMART WD40_4 895 935 IPR001680 GO:0005515
Lele38g0493 1158 SMART WD40_4 433 472 IPR001680 GO:0005515
Lele38g0493 1158 SMART WD40_4 938 977 IPR001680 GO:0005515
Lele38g0493 1158 SMART WD40_4 612 652 IPR001680 GO:0005515
Lele38g0493 1158 SMART WD40_4 478 519 IPR001680 GO:0005515
Lele38g0493 1158 SMART WD40_4 566 609 IPR001680 GO:0005515
Lele38g0493 1158 SMART WD40_4 1029 1070 IPR001680 GO:0005515
Lele38g0493 1158 FunFam Topless-related protein 1 352 570 - -
Lele38g0493 1158 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 29 1140 IPR027728 GO:0006355
Lele38g0493 1158 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 528 IPR001680 GO:0005515
Lele38g0493 1158 ProSitePatterns Trp-Asp (WD) repeats signature. 506 520 IPR019775 -
Lele38g0493 1158 MobiDBLite consensus disorder prediction 312 338 - -
Lele38g0493 1158 SMART Lish 32 64 IPR006594 GO:0005515
Lele38g0493 1158 MobiDBLite consensus disorder prediction 1140 1158 - -
Lele38g0493 1158 SUPERFAMILY WD40 repeat-like 862 1123 IPR036322 GO:0005515
Lele38g0493 1158 ProSiteProfiles LIS1 homology (LisH) motif profile. 32 64 IPR006594 GO:0005515
Lele38g0493 1158 SMART ctlh 62 120 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0493 Lele-ChrLele38 3986833 3996241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0493 483 696 Miscellaneous Gene Families AT5G08390 24.312 6.54e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0521 37 4275672 4285541 Lele38g0493 38 3986833 3996241 ECH
Lele38g0493 38 3986833 3996241 Lele38g0493 38 3986833 3996241 ECH
Lele38g0493 38 3986833 3996241 Lele39g0905 39 17992480 18000124 hybridization
Lele38g0493 38 3986833 3996241 Lele40g0465 40 3840044 3848691 hybridization