Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0905 ATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATTTTACAATTTCTGGAAGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAACAAGAGTCTGGATTTTTCTTTAACATGAAATATTTTGAAGATGAAGTACACAATGGCAACTGGGATGAGGTTGAAAGATATCTCTCTGGTTTCACAAAAGTTGATGATAATCGGTATTCAATGAAGATATTTTTTGAGATTAGGAAGCAGAAATACCTTGAAGCATTAGATAAGCACGACAGGTCCAAGGCAGTTGAAATATTGGTGAAGGATTTAAAAGTTTTTTCCACATTCAATGAAGACCTATTCAAGGAAATCACACAGCTCTTGACTTTGGAGAATTTCAGGGAAAATGAACAATTGTCAAAGTACGGTGATACAAAGTCTGCAAGGGCAATCATGTTGATTGAACTTAAAAAGCTGATTGAAGCAAATCCCTTATTCCGTGACAAATTGCAGTTTCCCAACCTTAAAAACTCAAGATTGCGAACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAGCTCTGCAAGAATCCACGGCCAAATCCAGATATTAAAACTCTTTTTGTGGATCACTCCTGTGGACAGCCAAATGGTGCACGGGCACCATCACCTGCTAATAATCCGCTACTTGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCTCTAGGTGCACATGGGCCATTTCAACCTACCACGGCACCCGTGCCAACACCCCTGGCAGGCTGGATGTCAAATCCTACCCCTGTAGCCCATGCTGCAGTGTCTGGAGGAGGAGCTATAAGTCTTGGTGGTCCTTCAATCTCTGCTGCTTTGAAGCACCCTAGGACCCCTCCAACTAACCCATCTGTTGACTACCCATCTGGAGATTCTGACCACGTATCTAAGAGAACAAGGCCAATGGGAATGCCAGATGAGGTGAATCTATCTGTTAATGTGTTACCAGCTGCATTACCGGGTCACGGGCATGGCCAATCTTTCAATGTACCTGATGACTTGCCAAAGACTGTTACACGAACTCTGAATCAGGGTTCAGCTCCAATGAGCTTGGACTTTCATCCAGTTCAACTGAGTTTACTTCTTGTTGGTACCAATATGGGGGACATTTCTTTGTGGGAAGTGGGCTCTCGGGAGAGATTGGTATCAAGGAACTTTAAAGTTTGGGATCTAAGTGCCTGCTCAATGCCACTTCAGGCTGCTCTTGTCAAAGATCCCAGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCGTACTCGAGGCATATTGTTCAGATATACTCATACCATGGTGGGGATGATGTGCGCCAACACCTGGAGATTGATGCTCATGTTGGTGGAGTGAACGATCTTGCATTTTCCCACCCAAATAAGCAACTGTGTGTCATAACTTGTGGTGATGATAAGACCATTAAGGTTTGGGATGCTGCTACTCGTGCAAAACAGTTTACTTTTGAAGGTCACGAGGCTCCAGTCTATTCTGTTTGTCCTCATTACAAAGAAAACATTCAGTTTATATTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGTTCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACGACCATGGCTTACAGTGCTGATGGTACAAGGCTCTTTTCATGTGGTACAAGCAAAGATGGGGAATCCTCAATTGTCGAATGGAATGAAAGTGAAGGAGCTGTCAAAAGGACATATCAAGGATTTCGGAAAAGATCATTGGGCGTTGTGCAATTTGATACGACAAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTGCATTAAATTCTGGGATATGGACAACGTTCAACTTTTGACAACTATTGATGCTGATGGAGGTCTACCTGCAAGCCCACGTATCCGTTTCAACAAGGATGGAACCCTCTTGGCTGTTTCTGCAAATGAGAATGGAATTAAAATTTTAGCAAATGCAGATGGAATAAGATTGTTACGAACATTAGAGAATTCTGCATTTGAGGCATCAAGAACATCTGAAGTCATAAAGCCCGCAATAAATCCAATTTCAGCTGCTGCTGCTGCTGCAGGTGGTGCTGCACTTGCAGAGAGGGGCTCATCTGTAGTAGCTATTGCGGGAATGAATGGGGATGCTCGGAACATGGGTGATGTTAAACCAAGAATTGCCGAAGAATCCAATGATAAGTCAAAGATATGGAAGGTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAACTACCTGAGAGTCTGAGAGTAACAAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCGATACTGGCATTATCATCAGATGCAATTCATCTGCTCTGGAAATGGCAGCGAAGTGACCGAAATTCTTCTGGCAAGGCCACTGCCATTGTCTCACCACACTTGTGGCAACCATCGAGTGGCATCTTGATGACCAATGACATTTCTGACAGCAATCCTGAGGATGCTGTGCCTTGCTTTGCTCTCTCCAAAAATGATTCTTATGTGATGTCAGCATCAGGAGGGAAGATTTCACTTTTCAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCACCACCTGCAGCAACCTTTCTTGCTTTCCACCCTCAGGATAACAATATTATCGCTATTGGGATGGATGATTCCACCATTCAGATATATAATGTCCGTGTGGATGAGGTTAAAAGTAAACTTAAAGGTCACACCAAAAGAATAACCGGCCTTGCTTTCTCTCATGCATTGAATGTGTTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGAATGGGAAAAGCAGAAGAGTAGATTCTTGCAGATTCCTGCAGGGAGGACTGCAACGGCACAGGCAGAAACCCGTGTACAGTTTCACCAGGATCAGATACACTTCTTGGTTGTACATGAAACTCAGCTTGCCATATATGAAACGACAAAACTAGAATGTCTAGAGAAGTGGTTTCCAAGAGACTCTACTGCACCTATATCAGCTGCAACTTTCTCATGTGATAGCCAGCTGATATACGCCAGCTTTTTAGATGCAACAGTTTATGTCTTCAGTGCATCAAACCTCAGATTACGTTGTCGTATCAATCCTTCTTCTTATCTTTCTGCCGGTGTCAGCAGTTCCAATGTACAACCACTCGTGGTGGCAGCACATCCACAAGAACCAAATCAATTTGCTTTAGGATTGTCAGACGGCGGAGTTCACGTGTTTGAGCCGCTCGAGTCTGAAGGCAAGTGGGGTGTGCCTACTCCCATTGAGAATGGATCAGCAAGTACTGTGGTAGCTTCTTCAGATCAAGCCCAGAGATAA 3387 0.4311 MSSLSRELVFLILQFLEEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLIELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTTAPVPTPLAGWMSNPTPVAHAAVSGGGAISLGGPSISAALKHPRTPPTNPSVDYPSGDSDHVSKRTRPMGMPDEVNLSVNVLPAALPGHGHGQSFNVPDDLPKTVTRTLNQGSAPMSLDFHPVQLSLLLVGTNMGDISLWEVGSRERLVSRNFKVWDLSACSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATRAKQFTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFCIKFWDMDNVQLLTTIDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGIRLLRTLENSAFEASRTSEVIKPAINPISAAAAAAGGAALAERGSSVVAIAGMNGDARNMGDVKPRIAEESNDKSKIWKVTEINEPSQCRSLKLPESLRVTKISRLIYTNSGNAILALSSDAIHLLWKWQRSDRNSSGKATAIVSPHLWQPSSGILMTNDISDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQLCVWNTDEWEKQKSRFLQIPAGRTATAQAETRVQFHQDQIHFLVVHETQLAIYETTKLECLEKWFPRDSTAPISAATFSCDSQLIYASFLDATVYVFSASNLRLRCRINPSSYLSAGVSSSNVQPLVVAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPTPIENGSASTVVASSDQAQR 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0905 1128 SUPERFAMILY WD40 repeat-like 346 534 IPR036322 GO:0005515
Lele39g0905 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 919 951 - -
Lele39g0905 1128 SMART ctlh 34 92 IPR006595 -
Lele39g0905 1128 Pfam WD domain, G-beta repeat 918 951 IPR001680 GO:0005515
Lele39g0905 1128 Pfam WD domain, G-beta repeat 457 491 IPR001680 GO:0005515
Lele39g0905 1128 MobiDBLite consensus disorder prediction 1111 1128 - -
Lele39g0905 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 502 1047 IPR011047 -
Lele39g0905 1128 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lele39g0905 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 919 960 IPR001680 GO:0005515
Lele39g0905 1128 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 979 1114 IPR011044 -
Lele39g0905 1128 MobiDBLite consensus disorder prediction 284 306 - -
Lele39g0905 1128 MobiDBLite consensus disorder prediction 1107 1128 - -
Lele39g0905 1128 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1115 IPR027728 GO:0006355
Lele39g0905 1128 Gene3D - 993 1125 IPR015943 GO:0005515
Lele39g0905 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 500 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 494 535 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 829 866 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 344 383 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 538 581 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 584 624 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 912 951 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 450 491 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 869 909 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 1003 1044 IPR001680 GO:0005515
Lele39g0905 1128 SMART WD40_4 405 444 IPR001680 GO:0005515
Lele39g0905 1128 SMART Lish 4 36 IPR006594 GO:0005515
Lele39g0905 1128 Gene3D - 322 513 IPR015943 GO:0005515
Lele39g0905 1128 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lele39g0905 1128 Gene3D - 514 708 IPR015943 GO:0005515
Lele39g0905 1128 FunFam Topless-related protein 3 738 972 - -
Lele39g0905 1128 FunFam Topless-related protein 1 324 542 - -
Lele39g0905 1128 Gene3D - 738 965 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0905 Lele-ChrLele39 17992480 18000124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0905 455 668 Miscellaneous Gene Families AT5G08390 24.312 3.27e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0905 39 17992480 18000124 Lele40g0465 40 3840044 3848691 ECH
Lele39g0905 39 17992480 18000124 Lele39g0905 39 17992480 18000124 ECH
Lele37g0521 37 4275672 4285541 Lele39g0905 39 17992480 18000124 hybridization
Lele38g0493 38 3986833 3996241 Lele39g0905 39 17992480 18000124 hybridization