Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0521 ATGACAGCTGTCAGCTCGAGATTCCGAGCCGACTCATCTAGACAAATTGAAGCCGGCTTCCTGGGCCCCTGTACTTATATCTGCAAGTTCAAATGTCCTGTATATATTTATAGAGAGAGACATTTTTTTCTGAGGAGCGAGAAAGCGAGTATAATAGTCCATTCTAAGGAGAGAGAAAATCCAGGAGATAGAAAGCTCGCCCCCCTCTGCTCTGTTCTGGTGCGTTTGTTTTCTGGCTTTGAAGGTGAGAGACGTGAGAACTTCCTCAGAAATCACTCTAATTTTCCGAATCTATCTAGTTTGCTATTGCTCATACTCGTACCTTCTTTTCTAATCGAAGCTGGGGCGGCTACGATGTCGTCTCTCAGTAGAGAATTGGTTTTCTTGATTTTACAATTTCTGGAAGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAACAAGAGTCTGGATTTTTCTTTAACATGAAATATTTTGAAGATGAAGTACACAATGGCAATTGGGATGAGGTTGAAAGATATCTCTCTGGTTTCACAAAAGTTGATGATAATCGGTATTCAATGAAGATATTTTTTGAGATTAGGAAGCAGAAATACCTTGAAGCATTAGATAAGCACGACAGGTCCAAGGCAGTTGAAATATTGGTGAAAGATTTAAAAGTTTTTTCCACATTCAATGAAGACCTATTCAAGGAAATCACACAGCTCTTGACTTTGGAGAATTTCAGGGAAAATGAACAATTGTCAAAGTACGGTGATACAAAGTCTGCAAGGGCAATCATGTTGATTGAACTTAAAAAGTTGATTGAAGCAAATCCCTTATTCCGTGACAAATTGCAGTTTCCCAACCTTAAAAACTCAAGATTACGAACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAGCTCTGCAAGAATCCACGGCCAAATCCAGATATTAAAACTCTTTTTGTGGATCACTCCTGTGGACAGCCAAATGGTGCACGGGCTCCATCACCTGCTAATAATCCGCTACTTGGATCCTTACCAAGGGCTGGAGGGTTTCCTCCTCTAGGTGCACATGGGCCATTTCAACCTACCACGGCACCCCTGGCAGCACCCCTGGCAGGCTGGATGTCAAATCCTACCCCTGTAGCCCATGCTGCAGTTTCTGGAGGAGGAGCTATAGGTCTTGGTGGTCCTTCAATCTCTGCTGCTTTGAAGCACCCTAGGACCCCTCCAACTAACCCATCTGTTGACTACCCATCTGGAGATTCTGACCACGTATCTAAGAGACCAAGGCCAATGGGAATGCCAGATGAGGTGAATCTATCTGTTAATGTGTTACCAGCTGCATTACAGGGTCACGGGCATGGCCAATCTTTCAATGCACCTGATGACTTACCAAAGACTGTTACACGAACTCTGAATCAGGGTTCAGCTCCAATGAGCATGGACTTTCATCCAGTTCAACTGAGTTTACTTCTTGTTGGTACCATTGTGGGGGACATTTCTTTGTGGGAAGTGGGCTCACGGGAGAGATTGGTATCAAGGAACTTTAAAGTTTGGGATCTAAGTGCCTGCTCAATGCCACTTCAGGCTGCTCTTGTCAAAGATCCCAGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCGTACTCAAGGCATATTGTTCAGATATACTCATACCATGGTGGGGATGATGTGCGCCAACACCTGGAGATTGATGCTCATCTTGGTGGAGTGAACGATCTTGCATTTTCCCACCCAAATAAGCAATTGTGTGTCATAACTTGTGGTGATGATAAGACCATTAAGGTTTGGGATGCTGCTACTGGTGCAAAACAGTTTACTTTTGAAGGTCACGAGGCTCCAGTCTATTCTGTTTGTCCTCATTACAAAGAAAACATTCAGTTTATATTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGTTCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACAACCATGGCTTACAGCGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCAATTGTCGAATGGAATGAAAGTGAAGGAGCTGTCAAAAGGACATATCAAGGATTTCGTAAAAGATCATTGGGCGTTGTGCAATTTGATACAACAAAAAATCGATTTTTGGCTGCTGGGGATGATTTCTGCATTAAATTCTGGGATATGGACAACGTTCAACTTTTGACAACTATTGATGCTGATGGGGGTCTACCTGCAAGCCCACGTATCCGTTTCAACAAGGATGGAACCCTCTTGGCTGTTTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGCAGATGGAATAAGATTGTCACGAACATTAGAGAATTCTGCATTCGAGGCATCAAGAACATCTGAAGTCATAAAGGCCGCAATAAATCCAATTTCAGCTGCTGCTGCTGCTGCAAGTGGTGCTGCACTTGCAGAGAGGGGCTCATCTGTAGTAGCTATTGCAGGAATGAATGGGGATGCTCGGAACATGGGTGATGTTAAACCTAGAATTGCCGAAGAATCCAATGATAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCGTTGAAACTAGCTGAGAATCAGAGAGTAACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCGATACTGGCATTATCATCAGATGCAGTTCACCTGCTCTGGAAATGGCAGCGAAGTGACCGAAATTCTTCTGGCAAGGCCACTGCCAGTGTCTCACCACACTTGTGGCAACCATCGAGTGGCATCTTGATGACCAATGACATTTCTGACAGCAATCCTGAGGATGCTGTGCCTTGCTTTGCTCTCTCCAAAAATGATTCTTATGTGATGTCAGCATCAGGAGGGAAGATTTCACTGTTCAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCACCACCTGCAGCAACCTTTCTTGCTTTCCACCCTCAGGATAACAATATTATCGCTATTGGGATGGATGATTCCACCATTCAGATATATAATGTCCGTGTGGACGAGGTTAAAAGTAAACTTAAAGGTCACACCAAAAGAATAACCGGCCTTGCTTTCTCTCATGCATTGAATGTGTTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGAAAATCAGAAGAGTAGGTTCTTGCAGATTCCTGCAGGGAGGACTGCAACGGCACAGGCAGAAACCCGTGTACAGTTTCACCAGGATCAGATACACTTCTTGGTTGTACATGAAAGTCAGCTTGCCATATATGAAACAACAAAACTAGAATGTCTAGAGAAGTGGTTTCCAAGAGACTCCACTGCACCTATATCAGCTGCAACTTTCTCATGTGATAGCCAGCTGATATACGCCAGCTTTTTAGATGCAACAGTTTATGTCTTCAGTGCATCAAACCTCAGATTACGTTGTCGTATCAATCCTTCTTCTTATCTTTCTGCCGGTGTCAGCAGTTCCAATGTACAACCACTCGTGGTGGCAGCACATCCACAAGAACCAAATCAATTTGCTTTAGGATTGTCAGACGGCGGAGTTCACGTGTTTGAGCCGCTCGAGTCTGAAGGCAAGTGGGGTGTGCCTACTCCCATTGAGAATGGATCAGCAAGTACTGTGGTAGCTTCTTCAGATCAAGCCCAGAGATAA 3741 0.4336 MTAVSSRFRADSSRQIEAGFLGPCTYICKFKCPVYIYRERHFFLRSEKASIIVHSKERENPGDRKLAPLCSVLVRLFSGFEGERRENFLRNHSNFPNLSSLLLLILVPSFLIEAGAATMSSLSRELVFLILQFLEEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLIELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPRAGGFPPLGAHGPFQPTTAPLAAPLAGWMSNPTPVAHAAVSGGGAIGLGGPSISAALKHPRTPPTNPSVDYPSGDSDHVSKRPRPMGMPDEVNLSVNVLPAALQGHGHGQSFNAPDDLPKTVTRTLNQGSAPMSMDFHPVQLSLLLVGTIVGDISLWEVGSRERLVSRNFKVWDLSACSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHLGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQFTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFCIKFWDMDNVQLLTTIDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGIRLSRTLENSAFEASRTSEVIKAAINPISAAAAAASGAALAERGSSVVAIAGMNGDARNMGDVKPRIAEESNDKSKIWKLTEINEPSQCRSLKLAENQRVTKISRLIYTNSGNAILALSSDAVHLLWKWQRSDRNSSGKATASVSPHLWQPSSGILMTNDISDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQLCVWNTDGWENQKSRFLQIPAGRTATAQAETRVQFHQDQIHFLVVHESQLAIYETTKLECLEKWFPRDSTAPISAATFSCDSQLIYASFLDATVYVFSASNLRLRCRINPSSYLSAGVSSSNVQPLVVAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPTPIENGSASTVVASSDQAQR 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0521 1246 ProSiteProfiles Trp-Asp (WD) repeats profile. 1037 1078 IPR001680 GO:0005515
Lele37g0521 1246 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1037 1069 - -
Lele37g0521 1246 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 541 1074 IPR011047 -
Lele37g0521 1246 FunFam Topless-related protein 1 442 660 - -
Lele37g0521 1246 ProSiteProfiles LIS1 homology (LisH) motif profile. 122 154 IPR006594 GO:0005515
Lele37g0521 1246 SUPERFAMILY WD40 repeat-like 1096 1216 IPR036322 GO:0005515
Lele37g0521 1246 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 119 1233 IPR027728 GO:0006355
Lele37g0521 1246 SMART Lish 122 154 IPR006594 GO:0005515
Lele37g0521 1246 SMART WD40_4 987 1027 IPR001680 GO:0005515
Lele37g0521 1246 SMART WD40_4 1121 1162 IPR001680 GO:0005515
Lele37g0521 1246 SMART WD40_4 462 501 IPR001680 GO:0005515
Lele37g0521 1246 SMART WD40_4 612 653 IPR001680 GO:0005515
Lele37g0521 1246 SMART WD40_4 523 562 IPR001680 GO:0005515
Lele37g0521 1246 SMART WD40_4 568 609 IPR001680 GO:0005515
Lele37g0521 1246 SMART WD40_4 947 984 IPR001680 GO:0005515
Lele37g0521 1246 SMART WD40_4 656 699 IPR001680 GO:0005515
Lele37g0521 1246 SMART WD40_4 702 742 IPR001680 GO:0005515
Lele37g0521 1246 SMART WD40_4 1030 1069 IPR001680 GO:0005515
Lele37g0521 1246 SMART ctlh 152 210 IPR006595 -
Lele37g0521 1246 ProSitePatterns Trp-Asp (WD) repeats signature. 596 610 IPR019775 -
Lele37g0521 1246 Gene3D - 635 829 IPR015943 GO:0005515
Lele37g0521 1246 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 152 210 IPR006595 -
Lele37g0521 1246 MobiDBLite consensus disorder prediction 1225 1246 - -
Lele37g0521 1246 FunFam Topless-related protein 3 856 1090 - -
Lele37g0521 1246 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 618 IPR001680 GO:0005515
Lele37g0521 1246 Gene3D - 855 1083 IPR015943 GO:0005515
Lele37g0521 1246 Gene3D - 1111 1243 IPR015943 GO:0005515
Lele37g0521 1246 MobiDBLite consensus disorder prediction 1229 1246 - -
Lele37g0521 1246 Gene3D - 438 634 IPR015943 GO:0005515
Lele37g0521 1246 SUPERFAMILY WD40 repeat-like 465 566 IPR036322 GO:0005515
Lele37g0521 1246 Pfam WD domain, G-beta repeat 575 609 IPR001680 GO:0005515
Lele37g0521 1246 Pfam WD domain, G-beta repeat 1036 1069 IPR001680 GO:0005515
Lele37g0521 1246 MobiDBLite consensus disorder prediction 399 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0521 Lele-ChrLele37 4275672 4285541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g0521 573 786 Miscellaneous Gene Families AT5G08390 24.312 2.97e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0521 37 4275672 4285541 Lele38g0493 38 3986833 3996241 ECH
Lele37g0521 37 4275672 4285541 Lele37g0521 37 4275672 4285541 ECH
Lele37g0521 37 4275672 4285541 Lele39g0905 39 17992480 18000124 hybridization
Lele37g0521 37 4275672 4285541 Lele40g0465 40 3840044 3848691 hybridization