Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1219 ATGTATAAGTTTAGTTTTGCGGAATTACTTCTCTTAGCCGGAATCACGTTGGTGCTCGCAGCACCGAAGACCAAGCTCTTTAGAGCATACATTGGAGCCGAAGGCAACAACGTGAAGTTCTCAGACGTCCCCATAAATCCCACTGTGGAGTACCACTTCATTCTCTCATTCGCCATTGATTACTCAAACTCAACGTCACCTCCAAGCCCCACCAATGGCGGTTTTAAACCCTACTGGGACACAAAATCTCACCCTTCTCATGTCTCTTCCATTAAAGCCTCCCACCCTAACGTTAAAGTAGCTCTGAGCCTCGGAGGCGACCCCATAGCTCTCCATGAAGTGTTCTTCAAACCCACATCGACAAATTCATGGCTCCGAAATGCAATGCATTCTATCACTCAACTAGTCCAGTCCAACAACCTAGACGGTATTGACATTGACTACGAACATTTCGACACAGATCCTGATACGAGAAAGATGCATAGAGCACGAGCTGAAGGCCTAACCTTCACGAAGGAACCATATATTGAGGATGTTGGACCACGCAGAATCAAGAGTATGCAATTCACTGCATTATCAGAGTCAGAGATCAGTAAACTTGCTGAGGTTCAAGTTGCAAGAGGTGTATACTATGATGAAAGAAGAAAGCCAATAGAGGATGGCTTGTTGGATGCCCGCATGGGCCCTGCTAATAAGAGTTGCACATGTGCAACATGCCTTGGGAATTTTGCTGACTGTCCAGGGCATTATGGATACTTAAACCTTGCTCTTCCAGTCTTCAATGTTGGATATAAAGAAAAAATTTTGCAAATATTGAAGTGCATTTGTAAGGGCTGTGCTCGTATACTCCTCGATGAAGATTCTTGTAAAGAACGCTTGAAGAAGATGAGAAGCCCCAAAATAGAGCCTATGAAGAAGATTGCAATAGCTAAAAGTCTTATTGATAAATGTAGCGCCATGACAAGTAGCAAAGCAGTGAAGTGTCTAAGATGTGGATTTATTAATGGTCCAGTGAAGAAGCTTGTGTCTAATCTAGGCATCTTGCATGATACTTCAAAATGTATTGATGGCAATGTGGAAGAGTTTCGATCTGCAATTTCTCATACAAGAGAGTCTAAGGCTCCCATCAACTTGACTACTCATGTTCTTAACCCTCACAGAGTTCTTTCCCTCTTCAAAAGGATGCTTGATGAGGACTGTGAATTACTTTATCTTGCAGACAGACCTGAGAAATTCATTATGACAAACATGGCCGTGCCGCCTATACCTATTCGACCTTCAGTTATAATGGATAATTCCCAGAGCAATGAAAATGATGCGACAGAGAGGCTAAAGCAAATAATTCAAGCAAATGCTACCCTTCGCCAGGAGTTACAGGAAGCTAGCGCGGCATTCAAATCTCTGGATGGCTGGGAAGTACTTCAAGCTGAGGTTGCTCAATTCATAAATAGTGATGTTCGTGGTATTCCATTTAATATGCAACGAGCCAAGCCATTGGCTGGCTTTGTTCAACGCCTTAAAGGAAAGCAGGGGCGTTTTCGTGGCAACTTATCAGGGAAACGTGTTGAGTTTACTGGCAGGACAGTCATTTCACCGGATCCTAATCTGAAAATTTCTGAGGTCGCAATACCAATCCATATGGCTCGTATATTGACTTTTCCTGAGTGTGTTTCCCATCACAACATTGAGAAGTTGAGACAGTGTGTGAGAAATGGCCCTGATAAGTATCCTGGTGCAAGGTTGCTTAGACAAGCTGGTGGTCCAACAAGGTCCCTAAAAGTTTCTTTACGGAAGCGCTTCGCAGATGAATTGAGGTATGGTGACATTGTTGATCGTCATTTGGAAGATGGAGACGTTGTGCTTTTTAATAGACAACCAAGCTTGCATCGGATGTCTATCATGTGTCATAGGGCTAGAGTTATGCCTTGGAGAACTTTGAGATTCAATGAATCGGTTTGCAACCCATATAATGCCGACTTTGATGGTGATGAGATGAATATGCATGTCCCGCAGACCGAGGAGGCACGGACAGAGGCTATTTTATTGATGGGGGTGCAAAGCAATTTATGCACACCAAAGAATGGGGAAATTCTGGTTGCCTCTACTCAAGACTTTTTAACCTCCTCCTTTTTGATAACAAGAAAAGATACTTTTTATGATCGTTCTACTTGTGCACTTATTTGCTCGTACATGGATGATGCCATGGATATTATTGATCTGCCAACTCCGGCAATTATAAAGCCCATAGAGCTTTGGAGTGGGAAACAGATATTTAGTGTTCTAATTCGCTCTCATGCAAATGTGAGGACCTATGCGAATCTCACTGTTAAGGAGAAGATCTACAGTACAAAGCTTGATGACAGGAAAAGAGAGTTAAAAACAATGTGTCCTAATGATGGGTTTGTTTATTTTCGCAACAGTGAGTTGATTTCTGGGCAACTTGGAAAGGTTACTTTAGGAAATGGAAATAAGGATGGACTTTTCTCGATACTACTAAGAGACTATAAAGCGCACGCCGCAGCCTCTTGCATGAACCGTTTAGCTAAGTTGAGTGCTCGATGGATAGGTAATCGTGGGTTCTCCATAGGCATTGATGATGTCCAACCAAAAGAGGTATTGATCAACAAGAAAGATGAAACAATTTCAGATAACTACAAAAAATGTGATGATTTTATCAAGGCCTTCAATGAAGGAAAGTTAGAACTCAAAGCTGGTTGTGATGCTGCTCAAACATTAGAGACTCTGATAACTGGTGTATTGAATGGCATTCGAGATACTGCAGGGAAGGTTTGCATGCAAACACTGCACTGGAGAAATAGTCCCTTGATCATGTCACAGTGTGGCTCCAAAGGATCTCCTATAAATATCAGTCAAATGGTTGCGTGTGTTGGGCAACAGTCAGTTGGGGGTCGTCGAGCCCCCAATGGGTTCATGGATCGGAGTCTTCCTCATTTCCCAAGAAATGAAAAAAAACCTGCAGCGAAAGGTTTTGTAGCCAATTCCTTTTATAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACTGCGGTGAAAACTGCTGACACTGGTTATATGTCTCGAAGATTAATAAAAGCTTTGGAGGACTTGTTTGTCCACTATGATAACACTGTAAGAAACGCTAGTAGTTGTGTAGTCCAATTTTGCTATGGAGATGATGGCATGGATCCAGCTGGCATGGAAGGAAAAAATGGAAAACCTTTGAATTTTGAGCGGTTGTTTATGAAAAGCAAGGCTATTTGTCCCAGTGATGGAGATGATGAAATCCTATCCTCCTCTGGTGTGTCTAAAGTAATGCAAGAGAAACTGTCAAAAGTTGGAATGTTGGGAGAGAAAGGAGTTTCAGAGGATGATACAAGTTCTGATGTTGTTTGCTCTGCTGACTTCATCAATTCTCTACAATCCTTCATCAGAGATAACATCGGAGTCTTATCGGAAACTGATGAAACTTCTGTGGACGATGACACTAGAAATCAGAAGAAATTTATTCAAACGATATCTGGTGTTACTAGTAGACAGCTAGAGGTTTTCCTGGATATATGTCTTTCTCGATATCGTTCGAAAAGAATCGAGGCTGGTTGTCCAATTGGTGCCATTGGTGCTCAAAGTATTGGAGAGCCTGGGACACAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAATGTTACTCTTGGAGTTCCACGTATCAAAGAAATAATAAATGGCGCCAAGAAAATCAGCACGCCTATCATTACAGCAATACTTGATTGTGATGATAATGCTAATACTGCAAGGGTGGTAAAAGGTCGAATTGAGAAAACAAACTTGGGCCAGATAGCAAAGGGCATAAAAATTGTGATGACGAACAGGTTAGCATCAATTGTTGTCACACTCGATATGAAAAGAATCCAAGAAGCACAATTGAATATAGATGCTAATATTGTAAGGGAATCGATTTTGCGAGCTCCAAGATTAAAATTGAAGCCAGAGCACATTAACGTTTTGGATATCAAAAAGCTTGAAGTTGTACCCCAAGATGCTGATAGAAGTAAAATCAACTTTCAACTTAACCATCTAAAAAATTTGCTTCCGTCAGTTGTAGTAAAGGGAATTAAGACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAATTGACAAAGATGGAGAAGTTCAAATTGTTGGTAGAAGGCACGGGCCTTCAAAATGTTATGGGTATTGAGGGGGTTGATGGACGTAAAACTCTGAGTAATCATATCATTGAAGTAGAGCAGACTCTGGGAATTGAAGCAGCTAGAAAATGCATCATTGAAGAGATTAAGTTTACAATGGGAAGCCATGGAATGAGTATAGACATACGCCATATGATGCTTTTGGCCGATGTGATGACCTCCAGGGGTGAAGTCCTTGGAATAACAAGATTTGGAATCCAAAAGATGGACAAGAGTGTGTTAATGCTTGCATCATTCGAGAAGACTGCAGATCACCTCTTCAATGCTTCTGTGCATGGGAGGGATGATCAGATTGAAGGAGTTACTGAATGCATAATCATGGGCATCCCAATTCAGATAGGCACTGGAATGATCAAAGTTAAACAAAGATTGGATCCTCCGGCGCTGTGTCAAGGTGCCGATCCTATTCTGGCTTGA 4689 0.4171 MYKFSFAELLLLAGITLVLAAPKTKLFRAYIGAEGNNVKFSDVPINPTVEYHFILSFAIDYSNSTSPPSPTNGGFKPYWDTKSHPSHVSSIKASHPNVKVALSLGGDPIALHEVFFKPTSTNSWLRNAMHSITQLVQSNNLDGIDIDYEHFDTDPDTRKMHRARAEGLTFTKEPYIEDVGPRRIKSMQFTALSESEISKLAEVQVARGVYYDERRKPIEDGLLDARMGPANKSCTCATCLGNFADCPGHYGYLNLALPVFNVGYKEKILQILKCICKGCARILLDEDSCKERLKKMRSPKIEPMKKIAIAKSLIDKCSAMTSSKAVKCLRCGFINGPVKKLVSNLGILHDTSKCIDGNVEEFRSAISHTRESKAPINLTTHVLNPHRVLSLFKRMLDEDCELLYLADRPEKFIMTNMAVPPIPIRPSVIMDNSQSNENDATERLKQIIQANATLRQELQEASAAFKSLDGWEVLQAEVAQFINSDVRGIPFNMQRAKPLAGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKISEVAIPIHMARILTFPECVSHHNIEKLRQCVRNGPDKYPGARLLRQAGGPTRSLKVSLRKRFADELRYGDIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQSNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTCALICSYMDDAMDIIDLPTPAIIKPIELWSGKQIFSVLIRSHANVRTYANLTVKEKIYSTKLDDRKRELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSILLRDYKAHAAASCMNRLAKLSARWIGNRGFSIGIDDVQPKEVLINKKDETISDNYKKCDDFIKAFNEGKLELKAGCDAAQTLETLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFMDRSLPHFPRNEKKPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHYDNTVRNASSCVVQFCYGDDGMDPAGMEGKNGKPLNFERLFMKSKAICPSDGDDEILSSSGVSKVMQEKLSKVGMLGEKGVSEDDTSSDVVCSADFINSLQSFIRDNIGVLSETDETSVDDDTRNQKKFIQTISGVTSRQLEVFLDICLSRYRSKRIEAGCPIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKKISTPIITAILDCDDNANTARVVKGRIEKTNLGQIAKGIKIVMTNRLASIVVTLDMKRIQEAQLNIDANIVRESILRAPRLKLKPEHINVLDIKKLEVVPQDADRSKINFQLNHLKNLLPSVVVKGIKTAERVVISKEEDKLTKMEKFKLLVEGTGLQNVMGIEGVDGRKTLSNHIIEVEQTLGIEAARKCIIEEIKFTMGSHGMSIDIRHMMLLADVMTSRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVHGRDDQIEGVTECIIMGIPIQIGTGMIKVKQRLDPPALCQGADPILA 1562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1219 1562 Pfam RNA polymerase Rpb1, domain 2 519 685 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lele30g1219 1562 Gene3D - 1044 1095 - -
Lele30g1219 1562 Pfam RNA polymerase Rpb1, domain 1 182 517 IPR007080 GO:0003677|GO:0003899|GO:0006351
Lele30g1219 1562 SUPERFAMILY (Trans)glycosidases 23 155 IPR017853 -
Lele30g1219 1562 FunFam DNA-directed RNA polymerase subunit 1497 1542 - -
Lele30g1219 1562 Gene3D - 867 984 IPR038120 -
Lele30g1219 1562 Gene3D - 985 1043 - -
Lele30g1219 1562 PANTHER DNA-DIRECTED RNA POLYMERASE 188 1546 IPR045867 GO:0003899|GO:0006351
Lele30g1219 1562 Gene3D RNA polymerase ii 552 612 - -
Lele30g1219 1562 FunFam DNA-directed RNA polymerase subunit 869 984 - -
Lele30g1219 1562 Gene3D RNA polymerase II, clamp domain 174 297 IPR044893 -
Lele30g1219 1562 Gene3D RNA polymerase Rpb1, domain 3 693 866 IPR042102 -
Lele30g1219 1562 SMART rpolaneu7 410 713 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lele30g1219 1562 Coils Coil 437 464 - -
Lele30g1219 1562 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 141 149 IPR001579 GO:0004553|GO:0005975
Lele30g1219 1562 FunFam DNA-directed RNA polymerase subunit 693 866 - -
Lele30g1219 1562 CDD RNAP_III_RPC1_N 192 1055 IPR035697 -
Lele30g1219 1562 Gene3D Glycosidases 23 169 - -
Lele30g1219 1562 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 25 159 IPR001223 GO:0005975
Lele30g1219 1562 Gene3D - 510 692 - -
Lele30g1219 1562 Pfam RNA polymerase Rpb1, domain 4 896 998 IPR007083 GO:0003677|GO:0003899|GO:0006351
Lele30g1219 1562 FunFam DNA-directed RNA polymerase II subunit RPB1 597 692 - -
Lele30g1219 1562 CDD RNAP_III_Rpc1_C 1200 1542 IPR035698 -
Lele30g1219 1562 Pfam Glycosyl hydrolases family 18 51 153 IPR001223 GO:0005975
Lele30g1219 1562 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 176 1547 - -
Lele30g1219 1562 Gene3D - 1495 1549 - -
Lele30g1219 1562 Pfam RNA polymerase Rpb1, domain 3 688 867 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lele30g1219 1562 Pfam RNA polymerase Rpb1, domain 5 1005 1497 IPR007081 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1219 Lele-ChrLele30 14918492 14941430 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1215 09 21075325 21078770 Lele30g1219 30 14918492 14941430 CCT
Lele10g1190 10 23089421 23094316 Lele30g1219 30 14918492 14941430 CCT
Lele30g1219 30 14918492 14941430 Lele31g1367 31 19513744 19514609 hybridization