Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1242 ATGATAATTTCCATGCACTTTGTGCTTGCCACCTCCCCATTCTCTCCCCAACAACAACAACAACAGCAACAATCTCTCTCCCTTCTCTCACCAGAAGAACAACCAGCTACAGCCATGGCTGCCTCCCTCTCCACCGTTGGAGCAGTCAACAGAACTCCCCTGAGCATTAATGGTTCTGGATCTGGAGCTTCGGTTCCGAGCTCAGCTTTCATGGGGACGAGTTTGAAGAAGGTATTTGGTTCAAGGCTTCCCAACTACAAAGCTGGGAACTTTAAGGTTGTTGCGGCAGAGAAAGAGATTGATGAGGAGCAGCAGACAGACAAAGACAGGTGGAAGGGTCTGGCTTATGACGTTTCTGATGACCAGCAAGACATTACCAGAGGGAAGGGAATGGTTGACTCTCTCTTCCAAGCTCCCATGCAAACTGGAACTCACTATGCTGTCATGAGCTCTTACGAATACCTCAGCACCGGTCTTCGCCAGTACAACCTTGACAACAACATGGACGGCTTTTACATTGCCCCTGCCTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTTATGACCCTTCCTAACATCAAGATTCCTCTCATCCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCCTTCCAATGTGAGCTTGTCTTTGCTAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTAGAAAGTGGGAACGCCGGAGAGCCAGCAAAATTGATCAGGCAAAGGTACCGTGAAGCAGCAGACATCATCAAGAAGGGAAAGATGTGCTGTCTGTTCATCAACGATCTCGACGCCGGAGCTGGACGTATGGGAGGAACCACCCAATACACAGTGAACAACCAGATGGTGAACGCCACCCTCATGAACATCGCCGACAACCCCACCAACGTCCAACTCCCAGGTATGTACAACAAGGAAGAGAACCCCCGTGTCCCCATCATCGTCACCGGTAACGACTTCTCCACCCTCTACGCCCCCCTTATCCGTGACGGTCGTATGGAGAAATTCTACTGGGCCCCCACCAGAGAAGACCGTATAGGTGTCTGCAAGGGTATCTTCCGTACCGACGGCGTCGCCGACTCGGACATCGTCAAGCTCGTCGACACCTTCCCCGGCCAATCCATTGATTTCTTCGGAGCATTGAGGGCGAGAGTGTACGACGACGAGGTGAGGAAGTGGGTTTCAGGGGTTGGAGTGGAAGGAGTAGGGAAGAAGCTGGTGAACTCAAAGGAAGGACCACCGACATTTGAGCAGCCGAAGATGACAGTGGACAAGCTGTTGGAGTACGGAAACATGTTGGTGCAAGAACAAGAGAATGTGAAGAGAGTCCAATTGGCTGACAAGTACCTGAGCGAGGCTGCTCTTGGTGACGCCAACCAAGATGCTATTAAGAGTGGATCTTTCTACGGCCAAGCAGCACAGCAAGTAAACTTACCTGTTCCAGAAGGATGCACTGATCCAAATGCCAAAAACTTTGACCCCACTGCAAGGAGTGATGATGGAAGCTGCGTGTATAGATTATAA 1545 0.5042 MIISMHFVLATSPFSPQQQQQQQQSLSLLSPEEQPATAMAASLSTVGAVNRTPLSINGSGSGASVPSSAFMGTSLKKVFGSRLPNYKAGNFKVVAAEKEIDEEQQTDKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQTGTHYAVMSSYEYLSTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVADSDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVEGVGKKLVNSKEGPPTFEQPKMTVDKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANQDAIKSGSFYGQAAQQVNLPVPEGCTDPNAKNFDPTARSDDGSCVYRL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1242 514 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 348 460 - -
Lele28g1242 514 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 163 347 - -
Lele28g1242 514 PANTHER - 54 512 IPR044960 -
Lele28g1242 514 MobiDBLite consensus disorder prediction 13 33 - -
Lele28g1242 514 Gene3D - 348 460 - -
Lele28g1242 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 373 IPR027417 -
Lele28g1242 514 Pfam ATPase family associated with various cellular activities (AAA) 203 344 IPR003959 GO:0005524|GO:0016887
Lele28g1242 514 Gene3D - 163 347 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1242 Lele-ChrLele28 8208343 8211744 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0846 27 16503302 16507644 Lele28g1242 28 8208343 8211744 ECH
Lele25g1233 25 8218680 8221273 Lele28g1242 28 8208343 8211744 ECH
Lele26g1250 26 8179102 8182440 Lele28g1242 28 8208343 8211744 ECH
Lele28g1242 28 8208343 8211744 Lele25g1233 25 8218680 8221273 ECH
Lele28g1242 28 8208343 8211744 Lele26g1250 26 8179102 8182440 ECH
Lele28g1242 28 8208343 8211744 Lele27g0846 27 16503302 16507644 ECH
Lele28g1242 28 8208343 8211744 Lele28g1242 28 8208343 8211744 ECH
Lele25g1233 25 8218680 8221273 Lele28g1242 28 8208343 8211744 hybridization
Lele26g1250 26 8179102 8182440 Lele28g1242 28 8208343 8211744 hybridization