Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1233 ATGATTCTACCACTAATCCCCTGGATATGCATTTTTGTACACTCATTTACACCTCCCAACTATAAGTCCTTCACTCCTCTTTACCCTTCTCTCCCAGCTCGCCATTCCCAACAGCAACAAGAACAACCCCTTCGCCTTCTTCTCTCATCAGAAGAAACAACCAGCACAGCCATGGCTGCCTCCCTCTCCACTGTCGGAGCAGTCAACAGAACTCCCCTGAGCATTAATGGGTCTGGAGCTGGAGCTTCTGTTCCGAGCTCAGCTTTCATGGGGACAAGCTTGAAGAAGGTTTTTGGTTCAAGGCTTGCCAACTACAAATCTGGGAACTTTAAGGTTGTTGCTGCAGAGAAAGAGATTGATGAGGAGCAGCAGACAGACAAAGACAAATGGAGGGGTTTGGCTTTTGACACGTCTGATGACCAGCAAGATATTACCAGAGGGAAGGGAATGGTTGACTCTCTCTTCCAAGCTCCCATGCAAACTGGAACTCACTATGCCGTCATGAGCTCTTACGAGTACCTCAGCACCGGTCTTCGCCAGTACAACCTTGACAACAACATGGACGGCTTTTACATTGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACCCTTCCTAACATCAAGATTCCTCTCATCCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCCTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCCGGAGAGTTGGAGAGTGGGAACGCCGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACCGTGAAGCAGCAGACATAATCAGGAAGGGAAAGATGTGCTGTCTGTTCATCAACGATCTCGACGCCGGAGCTGGTCGTATGGGAGGAACCACCCAATACACAGTGAACAACCAGATGGTGAACGCCACCCTAATGAACATCGCCGACAACCCCACCAACGTCCAACTCCCAGGTATGTACAACAAGGAAGATAACCCCCGTGTCCCCATCATCGTCACCGGTAACGACTTCTCCACCCTCTACGCCCCCCTCATCCGTGACGGTCGTATGGAGAAATTCTACTGGGCCCCCACCAGAGAAGACCGTATCGGTGTCTGCAAGGGTATCTTCCGTACCGACGGCGTCGCCGACCAGGACATCGTCAAGATCGTCGACACCTTCCCCGGCCAATCCATTGATTTCTTCGGAGCATTGAGGGCGAGAGTGTACGACGACGAAGTGAGGAAGTGGGTTTCAGGGATTGGAGTGGAAGGTGTAGGGAAGAAGCTGGTGAACTCAAAGGAAGGACCACCGACATTTGAACAGCCAAAGATGACAGTGGAAAAGCTGTTGGAGTACGGAAATATGTTGGTGCAAGAACAAGAGAATGTGAAGAGAGTCCAATTGGCTGACAAGTACCTGAGCGAAGCTGCTCTTGGGGATGCCAACCAAGATGCCATTAAGAGTGGAACTTTCTACGGAGCTAGTTGA 1497 0.5017 MILPLIPWICIFVHSFTPPNYKSFTPLYPSLPARHSQQQQEQPLRLLLSSEETTSTAMAASLSTVGAVNRTPLSINGSGAGASVPSSAFMGTSLKKVFGSRLANYKSGNFKVVAAEKEIDEEQQTDKDKWRGLAFDTSDDQQDITRGKGMVDSLFQAPMQTGTHYAVMSSYEYLSTGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVADQDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGIGVEGVGKKLVNSKEGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANQDAIKSGTFYGAS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1233 498 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 367 479 - -
Lele25g1233 498 Gene3D - 367 479 - -
Lele25g1233 498 Pfam ATPase family associated with various cellular activities (AAA) 222 363 IPR003959 GO:0005524|GO:0016887
Lele25g1233 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 395 IPR027417 -
Lele25g1233 498 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 182 366 - -
Lele25g1233 498 Gene3D - 182 366 IPR027417 -
Lele25g1233 498 PANTHER - 71 484 IPR044960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1233 Lele-ChrLele25 8218680 8221273 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1233 25 8218680 8221273 Lele26g1250 26 8179102 8182440 ECH
Lele25g1233 25 8218680 8221273 Lele25g1233 25 8218680 8221273 ECH
Lele25g1233 25 8218680 8221273 Lele27g0846 27 16503302 16507644 ECH
Lele25g1233 25 8218680 8221273 Lele28g1242 28 8208343 8211744 ECH
Lele26g1250 26 8179102 8182440 Lele25g1233 25 8218680 8221273 ECH
Lele27g0846 27 16503302 16507644 Lele25g1233 25 8218680 8221273 ECH
Lele28g1242 28 8208343 8211744 Lele25g1233 25 8218680 8221273 ECH
Lele25g1233 25 8218680 8221273 Lele27g0846 27 16503302 16507644 hybridization
Lele25g1233 25 8218680 8221273 Lele28g1242 28 8208343 8211744 hybridization