Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0658 ATGTTGTGTAAAAAGGTAATGAGGCCACGGAAGAACGCGCAGGGAAAGAATCCGGTGTACCTGAACGTCTATGATCTTACGCCGATCAATGGGTATGCTTATTGGTTTGGGCTCGGAGTCTATCATTCTGGTGTGCAAGTTCATGGCGTTGAATATGCATTTGGAGCGCATGACCGCTCATCATCCGGGATATTTGAATTAGAGCCTCGGCGCTGTCCTGGTTTCACTTTCAGAAAATCAATTTATATTGGATCAACAGACTTGAGCCTCAGAGAGGTTCGGGCATATATGGAGTCAATAGCTGATAATTATGCTGGCAACTCATATCATCTCATAAAAAAAAACTGCAATCACTTCTGTAACGATGTTTGTGTCAAACTAACCAACAAGTCAATCCCTCGATGGGTAAATCGACTTGCTCGACTCGGCTTACTGTGCAACTGCGTTCTTCCGCCTGAACTGAGTGAGACGAAGATTCGAGCGGTATCATCAGATAATGGAGCCTCCGAAGCAGAGAGAAAGAAACTGAAGAGCCATTCTTCAAGGAGATACGAGACTCCCTCCAAATCGCAATTAGCTTGA 582 0.4485 MLCKKVMRPRKNAQGKNPVYLNVYDLTPINGYAYWFGLGVYHSGVQVHGVEYAFGAHDRSSSGIFELEPRRCPGFTFRKSIYIGSTDLSLREVRAYMESIADNYAGNSYHLIKKNCNHFCNDVCVKLTNKSIPRWVNRLARLGLLCNCVLPPELSETKIRAVSSDNGASEAERKKLKSHSSRRYETPSKSQLA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0658 193 Gene3D PPPDE domains 12 169 IPR042266 -
Lele28g0658 193 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Lele28g0658 193 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Lele28g0658 193 PANTHER DESUMOYLATING ISOPEPTIDASE 16 181 IPR008580 GO:0008233
Lele28g0658 193 MobiDBLite consensus disorder prediction 167 184 - -
Lele28g0658 193 Pfam PPPDE putative peptidase domain 18 151 IPR008580 GO:0008233
Lele28g0658 193 MobiDBLite consensus disorder prediction 161 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0658 Lele-ChrLele28 4200494 4202478 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0658 28 4200494 4202478 Lele01g0672 01 3912800 3913813 CCT
Lele28g0658 28 4200494 4202478 Lele02g0654 02 3913760 3915548 CCT
Lele28g0658 28 4200494 4202478 Lele03g0668 03 3922548 3923564 CCT
Lele28g0658 28 4200494 4202478 Lele04g0672 04 4058915 4059931 CCT
Lele25g0666 25 4181149 4183268 Lele28g0658 28 4200494 4202478 hybridization
Lele26g0674 26 4286203 4288179 Lele28g0658 28 4200494 4202478 hybridization