Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1753 ATGGGAAAGATCCGCAAAAGGAAGCAGCCAGAGGGTGATCGAGAGTCGAAGTTAAATTCTTCATTCGAGATTCGACCAAAATCCGCGCGAGCCACGAATGGCGCCGTTGAAAACCTGAAAGATCCGTTCCCAAGTCACGCTCGACCCACCCCCGAAGAATGCCGAGCCGTCCGAGACACTTTATTGGCCCGACACGATTTTCCCCAAGAGTTCGTCAAGTATCGCCGAAAATCAACGGACGATGCTGTGAAATTGGCACAGGACGACGACACTGGGTTACCCGCCCAAGAAGAGAGTGTTCTGGACGGTTTGGTTCGGACCGTGCTCTCGCAGAATACTACTGAAGCAAATTCTCAAAGGGCTTTTGCTTCCCTCAAATCTGCCTTTCCTACTTGGGAAGATGTTCTTAGTGCTGGCGCCAAGGATGTGGAGGATGCCGTTCGATGTGGTGGTTTGGCTCCAACTAAGGCTTCTTGTATTAAGAATGTATTAAGTTGCTTGCTTGAGAGAAGAGGAAAATTATGCTTGGAGTATTTGCGAGACTTGTCTCTTGATGAAATTAAGTCGGAGCTTTCTCTTTTCAAAGGAATTGGTCCCAAGACAGTATCTTGTGTCCTGATGTTCAATCTTCAGCGAGATGATTTTCCTGTAGACACACATATATTTGAGATTGCAAAAACCATTGGGTGGGTACCAGCTGTTGCGGATAGAAACAAGACCTATCTTCATCTAAACCGCCGGATCCCAAAGGAACTCATGTTTGACTTGAACTGTCTTCTGTATACACATGGTAAGCTCTGTAGTAAATGCACCAGTAAGAGGGGTAAGCAACCTAAGAAGACATGTTGTGATAACTCTTGCCCTCTGTTGAAATACTTAATGCGGCATTTAAGATCTGGTGACGACTATGGATCTGTGTGGAGATATGTTCAAAATCCGCTTCTTCCTCTTCCTGAAACCTTGTCTGCTCATAACTGTCTTGCATCTATTTCGGTACTCGAAATTACTATGATTCGTCGGAATTATTTGAGCTGGGCTGTACTGTGTCTTCTGGTACTTTCGATACTCTTTGACCCGTCCGTGTCTGAATCACAATCCCATTGGGCTGCCAAGAAAAAACGCATGAGAGAGAAAGCTCGCGAGATGTTTTACCATGCGTATGACAACTACATGACTCATGCATTCCCGCACGATGAGCTAAAGCCTTTAACCAAAACATTCACGAACTCCCTTAGTGAGCTGGGAAATTTGAACCTTGAACACTTGCCTCAAGACTACAATGGCTCAGCCCTTACACTTATTGAATCATTGTCTAGCCTGGTTATTATGGGCAACAGCACTGAATTCAAGAGGGCAGTGCTCTGGCTTTCTGAAAATCTAACATTTGATGTTGATGCACGAATAAATCTTTTTGAGTGCAACATTAGAGTTCTTGGAGGACTTGTCTCTGCTCATCTTCTTGCATCTGATTCTGCAAATAATTTGTTCCAAGCAGCCTACAAAAATCAGCTGCTAGTACTGGCTGAAGATTTAGGGAACCGCTTTCTACCAGCATTTAATACACCCACAGGATTGCCATATGCCTGGATCAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCGGGTTGTGGTTCTTTGATTGTTGAAATGTGTGCTTTATCAAAATTGACTGGTGATCCTATATATGAATCAGTGGCTTTACGTGCTCTACACAAGCTCTGGAGCATGCGGAGTTCATTAAATTTATTTGGAACTACTCTAGATGTGGAAACTGGGGAATGGATAGAGTTTTCATCAGGAATTGGAGCGGGGGTTGATTCGTTCTATGAGTATCTCCTTAAAGCCCATATCCTTTTTGGGAAGGAAGACTTCTGGAGAATGTTTCATTCTGCTTATGTTGCTGTGCAGAAATATTTCAGACACGGTCCTTGGTACCATGAAGCTGATATGAGGACAGGAAGAGCAACTTATTGGCAACTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTCATTGGGGATATTGCAGCTGCTAATTCAACGCATCGTGAGTTCTACCATGTGTGGGAGAAATTTGGAGTGCTTCCAGAGAGGTATTTGCTGGACCATCAGATGCTGCATCCTACTGAAAAATATTATCCATTACGCCCTGAATTTGCAGAGTCAACGTTCTATTTATATCAAGCAACTAAAGATCCATGGTATATTGAAGTGGGTGAATTAATAATTAATTCCCTCAACACATACACCAGGGTTGAAGGTGGGTTTGCAAGCATCAGGGATGTGAAAACAATGGAGCTGGAAGATCATCAACATAGTTTTTTCCTTGCTGAAACGTGCAAATATTTATATCTTCTATTTGATGATTCATTTTTAAAAGGTGGTAATTACATATTTACCACTGAAGGCCATCCCCTTCCAGTACTAAGTGTTTGGCAAGAAAGGCTCCCAGAAACTTACGTTCCTACTAATTGGACTTACATGAAGAGTGAAAAGGCACATAAAATAAGTGCAATGTCAATGCAAGTATGTCCAGCAGTGACTCTAAGTTCAGGGAAACATATTGAGAGTGGATGCCATGTACCAGATGGCCGCAGTGATCACAGGTGTTTCGCGGATGAAGATTGTGGAGTTGACTCCACAACATGCAGAAGAAGGTCTTGTAGTATCGCTGGTTATTGTGGGTTATGGCTCTCCATATGA 2727 0.4323 MGKIRKRKQPEGDRESKLNSSFEIRPKSARATNGAVENLKDPFPSHARPTPEECRAVRDTLLARHDFPQEFVKYRRKSTDDAVKLAQDDDTGLPAQEESVLDGLVRTVLSQNTTEANSQRAFASLKSAFPTWEDVLSAGAKDVEDAVRCGGLAPTKASCIKNVLSCLLERRGKLCLEYLRDLSLDEIKSELSLFKGIGPKTVSCVLMFNLQRDDFPVDTHIFEIAKTIGWVPAVADRNKTYLHLNRRIPKELMFDLNCLLYTHGKLCSKCTSKRGKQPKKTCCDNSCPLLKYLMRHLRSGDDYGSVWRYVQNPLLPLPETLSAHNCLASISVLEITMIRRNYLSWAVLCLLVLSILFDPSVSESQSHWAAKKKRMREKAREMFYHAYDNYMTHAFPHDELKPLTKTFTNSLSELGNLNLEHLPQDYNGSALTLIESLSSLVIMGNSTEFKRAVLWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSANNLFQAAYKNQLLVLAEDLGNRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLIVEMCALSKLTGDPIYESVALRALHKLWSMRSSLNLFGTTLDVETGEWIEFSSGIGAGVDSFYEYLLKAHILFGKEDFWRMFHSAYVAVQKYFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDIAAANSTHREFYHVWEKFGVLPERYLLDHQMLHPTEKYYPLRPEFAESTFYLYQATKDPWYIEVGELIINSLNTYTRVEGGFASIRDVKTMELEDHQHSFFLAETCKYLYLLFDDSFLKGGNYIFTTEGHPLPVLSVWQERLPETYVPTNWTYMKSEKAHKISAMSMQVCPAVTLSSGKHIESGCHVPDGRSDHRCFADEDCGVDSTTCRRRSCSIAGYCGLWLSI 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1753 908 SUPERFAMILY DNA-glycosylase 97 275 IPR011257 GO:0003824|GO:0006281
Lele24g1753 908 Pfam HhH-GPD superfamily base excision DNA repair protein 105 249 IPR003265 GO:0006284
Lele24g1753 908 Gene3D - 93 273 IPR023170 -
Lele24g1753 908 SUPERFAMILY Seven-hairpin glycosidases 373 828 IPR036026 GO:0004571|GO:0005509|GO:0016020
Lele24g1753 908 SMART endo3end 109 266 IPR003265 GO:0006284
Lele24g1753 908 CDD ENDO3c 104 264 IPR003265 GO:0006284
Lele24g1753 908 MobiDBLite consensus disorder prediction 1 51 - -
Lele24g1753 908 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 346 840 IPR044674 GO:0004571|GO:1904380|GO:1904382
Lele24g1753 908 MobiDBLite consensus disorder prediction 1 21 - -
Lele24g1753 908 Gene3D Hypothetical protein; domain 2 94 216 - -
Lele24g1753 908 PRINTS Glycosyl hydrolase family 47 signature 467 485 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele24g1753 908 PRINTS Glycosyl hydrolase family 47 signature 382 402 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele24g1753 908 PRINTS Glycosyl hydrolase family 47 signature 517 536 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele24g1753 908 PRINTS Glycosyl hydrolase family 47 signature 665 681 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele24g1753 908 PRINTS Glycosyl hydrolase family 47 signature 781 801 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele24g1753 908 PRINTS Glycosyl hydrolase family 47 signature 722 746 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele24g1753 908 PRINTS Glycosyl hydrolase family 47 signature 608 625 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lele24g1753 908 Gene3D - 364 826 IPR012341 GO:0005975
Lele24g1753 908 Pfam Glycosyl hydrolase family 47 382 815 IPR001382 GO:0004571|GO:0005509|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1753 Lele-ChrLele24 22732059 22741175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1753 348 905 Glycoside Hydrolase AT1G27520 75.267 0.0 895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1753 24 22732059 22741175 Lele17g1015 17 20870932 20871971 CCT
Lele24g1753 24 22732059 22741175 Lele18g0523 18 3090036 3091063 CCT
Lele24g1753 24 22732059 22741175 Lele19g0541 19 3136055 3138360 CCT
Lele24g1753 24 22732059 22741175 Lele20g0910 20 15438979 15439905 CCT
Lele24g1753 24 22732059 22741175 Lele24g1753 24 22732059 22741175 ECH
Lele22g1794 22 23092794 23095325 Lele24g1753 24 22732059 22741175 hybridization