Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0512 ATGTTGAGACTGGTTTCCAAGAGAATTATGGGAGCAGCGTCGCGGCAGATGCCGGCGCCGGCGCCCCAGGTTCTGCCTCGATTCTACCATGAGAGGGTTGTTGACCACTACGACAACCCACGAAATGTTGGATCCTTCGACAAGAATGACCCCGACGTCGGTACGGGCCTGGTTGGAGCACCTGCATGTGGTGATGTCATGAAACTCCAGATTAAGGTTGATGAAAAGACCGGAAAGATTGTTGATGCTTGCTTCAAGACCTTCGGCTGTGGTTCGGCTATTGCGTCTTCGTCTGTGGCTACTGAATGGGTGAAAGGAAAGGAGATGGAAGAAGTTTTATCCATTAAAAATACTGAAATTGCAAAGCATCTATCACTTCCTCCAGTTAAGCTTCACTGCAGCATGCTTGCTGAGGATGCCATCAAAGCGGCTGTTAAAGACTATGAAGCAAAGCGTGCCAAGTCAGCTTCCACTGAGGCAACATCTGAAGAGAAGGCTGCCACTGCTTGA 510 0.4961 MLRLVSKRIMGAASRQMPAPAPQVLPRFYHERVVDHYDNPRNVGSFDKNDPDVGTGLVGAPACGDVMKLQIKVDEKTGKIVDACFKTFGCGSAIASSSVATEWVKGKEMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKSASTEATSEEKAATA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0512 169 FunFam Iron-sulfur cluster assembly protein 29 168 - -
Lele19g0512 169 Pfam NifU-like N terminal domain 29 154 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lele19g0512 169 SUPERFAMILY SufE/NifU 28 155 - -
Lele19g0512 169 CDD IscU_like 29 144 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lele19g0512 169 Gene3D - 28 169 - -
Lele19g0512 169 TIGRFAM iscU: FeS cluster assembly scaffold IscU 29 152 IPR011339 GO:0005506|GO:0016226|GO:0051536
Lele19g0512 169 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 5 160 IPR002871 GO:0005506|GO:0016226|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0512 Lele-ChrLele19 2938558 2941788 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1789 21 25552386 25553273 Lele19g0512 19 2938558 2941788 CCT
Lele22g1765 22 22892517 22893284 Lele19g0512 19 2938558 2941788 CCT
Lele23g0220 23 1496996 1499330 Lele19g0512 19 2938558 2941788 CCT
Lele24g1726 24 22537180 22537941 Lele19g0512 19 2938558 2941788 CCT
Lele17g1045 17 21061727 21063129 Lele19g0512 19 2938558 2941788 hybridization
Lele18g0493 18 2913919 2923185 Lele19g0512 19 2938558 2941788 hybridization