Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1045 ATGGGCTTGGCTAGGGCACACGCTTGTGGAGTTGTTGCCTACTCTTCTGTGGCTAATGAATGGGTAAAAGGGAAGCAAATGGAGGGAGTTTCATCCGTCAAAAACATAGAAATTGCAAAGCATCTGTCGTTTCGTCCATTTAAGCTTCACTGCAGCATGTTTGCTGAGGATGCCATCAAAGCAGGTGTTAAAAGCTATGAATCTAAGCGAGCCTTGGCAACAGCCAGTGAGGCAACATCTGGAGAGACTGCTGCCACGCCTATGAAAAATACTCTTCGCCCGATATCTCCTCATCTCTCTATTTATAAGCCTCAGTCCTCTTCCATGTCTTCAATTTTTAATAGAATCTCTGGAGCTTCCCTAACAGCTTTGGTCTTGGGTTTTTATCTTCTGTGTCTGAAAATGCCTTTGATTTGCTTCACCTATGCGGAATTCTACCAATTTTTCCATTTTTCGGCAAATTTCAACGTAATCTGTGCCGAGATTGCTGCTGTTGCCATGTCCTATCATCTGTATGAAGGGATAAAGAGATTACTGCATTAG 543 0.4328 MGLARAHACGVVAYSSVANEWVKGKQMEGVSSVKNIEIAKHLSFRPFKLHCSMFAEDAIKAGVKSYESKRALATASEATSGETAATPMKNTLRPISPHLSIYKPQSSSMSSIFNRISGASLTALVLGFYLLCLKMPLICFTYAEFYQFFHFSANFNVICAEIAAVAMSYHLYEGIKRLLH 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1045 180 Pfam Succinate dehydrogenase/Fumarate reductase transmembrane subunit 92 179 IPR000701 GO:0016627
Lele17g1045 180 SUPERFAMILY Fumarate reductase respiratory complex transmembrane subunits 88 179 IPR034804 GO:0016020
Lele17g1045 180 CDD SQR_TypeC_SdhC 93 179 - -
Lele17g1045 180 Gene3D Fumarate reductase/succinate dehydrogenase, transmembrane subunit 76 180 IPR034804 GO:0016020
Lele17g1045 180 PANTHER SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT 56 179 IPR014314 GO:0000104|GO:0006099|GO:0009055|GO:0045281
Lele17g1045 180 SUPERFAMILY SufE/NifU 12 71 - -
Lele17g1045 180 Pfam NifU-like N terminal domain 12 71 IPR002871 GO:0005506|GO:0016226|GO:0051536
Lele17g1045 180 Gene3D - 4 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1045 Lele-ChrLele17 21061727 21063129 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1789 21 25552386 25553273 Lele17g1045 17 21061727 21063129 CCT
Lele22g1765 22 22892517 22893284 Lele17g1045 17 21061727 21063129 CCT
Lele23g0220 23 1496996 1499330 Lele17g1045 17 21061727 21063129 CCT
Lele24g1726 24 22537180 22537941 Lele17g1045 17 21061727 21063129 CCT
Lele17g1045 17 21061727 21063129 Lele19g0512 19 2938558 2941788 hybridization
Lele17g1045 17 21061727 21063129 Lele20g0943 20 15595001 15597569 hybridization