Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0437 ATGCCTCATTCACCAAAAGCCACCAAGGGATATTCACTCCATGAAGCCAATCCCAAATTATCTTTCCGTGAACATTCGATCGGGACAATCGTCCGAGCTCGCATGGCAACGTCCTTCTCCACTGCTACCCTCGTCCGGTCCATCGTCAATCCCCATCAGAACCCTTCTAAAACCCTCGCACCCTTTAAAGAATCATTTCATGGAGCCTCGAACTGCGTAAGGTGCTCCGGGGAGTTCTCGTGGAGCTCTGCTGCAAGCTATGTGACTCTGAAGCTCGGTGCTCCCTGTAGATTTTCTAGCAGACTCATTGTTCCGAGGAGGTCGTTGCGGAGGACTGGAATCGTGAGGGCCGCAACTATTGAAGAAATAGAAGCTGAGAAGGCCTCCATTGAGAAAGATGTCACAAACCGGATGGAAAGGACTATTGAAACTGTTCGTTCAAATTTCAATTCCATAAGGACGGGGAGAGCAAACCCAGCCATGCTTGACAAAATAGAGGTGGAATATTATGGAACGCCAGTTAGCTTGAAGAGCATTGCTCAAATTAGCACTCCAGATGCCAGTTCTCTTTTGGTACAGCCATATGACAAATCAAGCCTGAAGGCTATTGAGAAAGCCATAGTCACCTCTGATGTGGGCATGACTCCAAATAATGATGGAGAAGTGATCCGATTGAGTATTCCACCATTGACATCAGAAAGAAGGAAGGAACTATCAAAGATAGTGGCTAAACAAACTGAAGAAGGGAAGGTAGCTCTGAGGAATATAAGAAGAGATGCGTTGAAAGCTTACGAAAAACTTGAGAAGGAGAAAAAACTCTCAGAAGATAACGTGAAGGACTTGACAAATGATTTGCAGAAATTGACTGATGAGTATATGAAGAAGATTGACAGTGTCTACAAACAGAAAGAAAAGGAGTTGCTAACCGTTTGA 933 0.4491 MPHSPKATKGYSLHEANPKLSFREHSIGTIVRARMATSFSTATLVRSIVNPHQNPSKTLAPFKESFHGASNCVRCSGEFSWSSAASYVTLKLGAPCRFSSRLIVPRRSLRRTGIVRAATIEEIEAEKASIEKDVTNRMERTIETVRSNFNSIRTGRANPAMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVTSDVGMTPNNDGEVIRLSIPPLTSERRKELSKIVAKQTEEGKVALRNIRRDALKAYEKLEKEKKLSEDNVKDLTNDLQKLTDEYMKKIDSVYKQKEKELLTV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0437 310 Gene3D - 137 307 IPR036191 -
Lele16g0437 310 Hamap Ribosome-recycling factor [frr]. 128 310 IPR002661 GO:0006412
Lele16g0437 310 TIGRFAM frr: ribosome recycling factor 136 310 IPR002661 GO:0006412
Lele16g0437 310 SUPERFAMILY Ribosome recycling factor, RRF 130 309 IPR036191 -
Lele16g0437 310 FunFam Ribosome-recycling factor 156 230 - -
Lele16g0437 310 Coils Coil 250 298 - -
Lele16g0437 310 CDD RRF 130 308 IPR002661 GO:0006412
Lele16g0437 310 FunFam Ribosome-recycling factor chloroplastic 213 310 - -
Lele16g0437 310 Coils Coil 120 140 - -
Lele16g0437 310 Gene3D - 156 230 - -
Lele16g0437 310 Pfam Ribosome recycling factor 147 308 IPR023584 -
Lele16g0437 310 PANTHER RIBOSOME RECYCLING FACTOR 78 309 IPR002661 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0437 Lele-ChrLele16 2344638 2349294 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0437 16 2344638 2349294 Lele05g1468 05 9419352 9423585 CCT
Lele16g0437 16 2344638 2349294 Lele06g1324 06 8483894 8485600 CCT
Lele16g0437 16 2344638 2349294 Lele07g1529 07 9416401 9418157 CCT
Lele13g1993 13 27313898 27317246 Lele16g0437 16 2344638 2349294 hybridization
Lele14g1927 14 25646931 25650590 Lele16g0437 16 2344638 2349294 hybridization