Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1993 ATGGCAACGTCCTTCTCCTCTGCTACCCTCGTCCGGTCCATCGTCAATCGCTACCAGAACCCTTCTAAAAACCTCGCAACCTTTAGAGAATCATTCCATGGATCCTCGACCTGCGTAAGGTACTCCGGGGAGTTCTCGTGGAGCTCTGCTGCAAGCTCTGTGACTCTGAAGCTCGGTGCTCCCTGTAGATTCTCTAGCAGATTCATTGTTCCTCGGAGGTCGTTGCGGAGGACTGGAATTGTGAGGGCCGCAACTATTGAAGAAATAGAAGCTGAGAAGGCCTTCATTGAGAAAGATGTTACAAATCGGATGGAAAGGGCCATTGAAACTGTTCGTTCAAATTTCAATTCCATAAGGACGGGGAGAGCAAACCCAGCCATGCTTGACAAAATAGAGGTGGAATATTATGGAACTCCAGTTAGCTTGAAGAGCATTGCTCAAATTAGCACTCCAGATGCCAGTTCTCTTTTAGTACAGCCATATGACAAATCAAGCCTGAAGGCTATTGAGAAAGCCATCGTCACCTCTGATGTGGGCATGACTCCAAATAATGATGGGGAAGTGATCCGATTGAGTATTCCAACATTGACATCAGAAAGAAGGAAGGAACTATCAAAAATAGTGGCTAAACAAGCTGAAGAAGGCAAGGTAGCTCTGAGGAATATAAGAAGAGATGCATTGAAAGCTTATGAAAAACTTGAGAAGGAGAAAAAACTCTCAGAAGATAACGTGAAGGACTTGACAACTGATTTGCAGAAATTGACTGATGAGTATATGAAGAAGATTGACAGTGTCTACAAACAGAAAGAAAAGGAGTTGCTAACCGTTTGA 831 0.4404 MATSFSSATLVRSIVNRYQNPSKNLATFRESFHGSSTCVRYSGEFSWSSAASSVTLKLGAPCRFSSRFIVPRRSLRRTGIVRAATIEEIEAEKAFIEKDVTNRMERAIETVRSNFNSIRTGRANPAMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVTSDVGMTPNNDGEVIRLSIPTLTSERRKELSKIVAKQAEEGKVALRNIRRDALKAYEKLEKEKKLSEDNVKDLTTDLQKLTDEYMKKIDSVYKQKEKELLTV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1993 276 Hamap Ribosome-recycling factor [frr]. 94 276 IPR002661 GO:0006412
Lele13g1993 276 Gene3D - 103 273 IPR036191 -
Lele13g1993 276 TIGRFAM frr: ribosome recycling factor 102 276 IPR002661 GO:0006412
Lele13g1993 276 FunFam Ribosome-recycling factor 122 196 - -
Lele13g1993 276 Pfam Ribosome recycling factor 113 274 IPR023584 -
Lele13g1993 276 Gene3D - 122 196 - -
Lele13g1993 276 SUPERFAMILY Ribosome recycling factor, RRF 96 275 IPR036191 -
Lele13g1993 276 FunFam Ribosome-recycling factor chloroplastic 174 276 - -
Lele13g1993 276 CDD RRF 96 274 IPR002661 GO:0006412
Lele13g1993 276 Coils Coil 216 257 - -
Lele13g1993 276 PANTHER RIBOSOME RECYCLING FACTOR 51 275 IPR002661 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1993 Lele-ChrLele13 27313898 27317246 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1993 13 27313898 27317246 Lele05g1468 05 9419352 9423585 CCT
Lele13g1993 13 27313898 27317246 Lele06g1324 06 8483894 8485600 CCT
Lele13g1993 13 27313898 27317246 Lele07g1529 07 9416401 9418157 CCT
Lele13g1993 13 27313898 27317246 Lele15g0412 15 2362336 2365673 hybridization
Lele13g1993 13 27313898 27317246 Lele16g0437 16 2344638 2349294 hybridization