Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2196 ATGCTTTTCTTTATCCCCACAAATGGATCCTCTTTCCTGCGACACTCCTCCTCTTTTCACTCTTCATCTTCCCCCTCTCACTCTGCCTCTTATGTGTCTTTAATCAACCATCCCTCTATTTCTCTATTTCCAATCTCAACCCCTTCTCTTTCTTCCCCTCTCCCCATCACAATGGCCAATTCCCCTCCTTCTTTCTTCCTCCTCCTCCTCTGCTGTTCCGGAGTCATGCTGCTCATCTTCTCCGATCGCGACTTCTCAACCCCACCTGCAGCCGATGTCTTCCTCTCTCACATTCCGATGATCCGCAAGATCCTCCCCAGAAGAACTTTAGGTGACACCACCGTCATCACTGTACCTGCCAGCAATCCTGTCACCGTCTACCCCACCAATCCATCTGCCGTGCCCGTCACTGTACCTTCCTCCAATTCCCCTGTACCAGTTGTGGCTTATCCTCCCCCGTCTCCGCCGTCGACTGGTGTCCCGGTCACGAATTCTCAACCCCCACCTTCTCCAACCGCCACTAATGTTCCTCCTGCCGTTTATGGGCAGAAGTGGTGTGTGGCTAAATCTGGAGTTTCACAAGCTGTTCTTCAGTCCGCCCTGGACTATGCTTGTGGAATGGGAGGCGTCGATTGCTCTCAGATACAGCAGGGAGGGAGCTGTTACAACCCCAGCACTCTGCAAAGCCACGCGTCTTATGCCTTCAACGCCTACTACCAAAAGAACCCTGCTCCGACCAGCTGTGACTTCGGAGGCTCTGCCACCTTAGTTACCACCAACCCTAGTACGGGATCTTGCATTTACGCGTCGTCGTCGTATTCTTCTCCATCGTCATCTTCGCCGCCAACAACTCCGTCGTCTTCTTCTTCATCGTCGCCAACGACATCTACTTCATCATCATCATCTCCGACAAAATCTCCAACTCCAACAACACCGTCATCACCAGGAGGAGGTGCTTTTGGCTATAGTAGCCCAACATCGTCGGCGCCGTTGAATTCGAGCAATCCGACGTCAGGTGCTATGCCACTGATCGGGTCGCAAAGCCCACCTTCAACCTCATGGTCACATTCAAGTGGTCTGAGACCCTTTGTTGCATCCACGCTTGTGCTGATATCGCTGGTCACTGCGAAGCTCAACATGCGCACTTAG 1149 0.5265 MLFFIPTNGSSFLRHSSSFHSSSSPSHSASYVSLINHPSISLFPISTPSLSSPLPITMANSPPSFFLLLLCCSGVMLLIFSDRDFSTPPAADVFLSHIPMIRKILPRRTLGDTTVITVPASNPVTVYPTNPSAVPVTVPSSNSPVPVVAYPPPSPPSTGVPVTNSQPPPSPTATNVPPAVYGQKWCVAKSGVSQAVLQSALDYACGMGGVDCSQIQQGGSCYNPSTLQSHASYAFNAYYQKNPAPTSCDFGGSATLVTTNPSTGSCIYASSSYSSPSSSSPPTTPSSSSSSSPTTSTSSSSSPTKSPTPTTPSSPGGGAFGYSSPTSSAPLNSSNPTSGAMPLIGSQSPPSTSWSHSSGLRPFVASTLVLISLVTAKLNMRT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2196 382 MobiDBLite consensus disorder prediction 152 174 - -
Lele13g2196 382 SMART X8_cls 184 268 IPR012946 -
Lele13g2196 382 FunFam Glucan endo-1,3-beta-glucosidase 4 179 272 - -
Lele13g2196 382 PANTHER BETA-1,3 GLUCANASE 101 290 IPR044788 -
Lele13g2196 382 Gene3D - 179 280 - -
Lele13g2196 382 Pfam X8 domain 184 255 IPR012946 -
Lele13g2196 382 MobiDBLite consensus disorder prediction 273 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2196 Lele-ChrLele13 28433734 28435191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2196 161 262 Glycoside Hydrolase AT5G55180 49.515 1.75e-27 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0241 05 1346686 1349052 Lele13g2196 13 28433734 28435191 CCT
Lele13g2196 13 28433734 28435191 Lele15g0216 15 1238134 1239421 hybridization
Lele13g2196 13 28433734 28435191 Lele16g0224 16 1242274 1243583 hybridization