Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2023 ATGGCGGATCAAAGTTTATCATGGTGTGGCCTTGGTTCGTACGTGCTGCTTTTCATGTGCTTGATACAGATACAAAGTCATTTATACGTGCGTGCCATTTTGGACCCTGTTGATTTCTTGGCTCTGCAATCCATTCGCAAGGCTCTGCAAGACATGCCGGGATCCAGTTTCCTTTCTTCTTGGGATTTCACTTCCGACCCATGTAAATTCGCCGGCGTTTACTGTGATTCCGATAAGGTCATTGCTCTCAATCTCGGGGATCCCAGAGCCGGTGCCCCTGGCCTAACCGGCAAACTCGACCCGGCCATCGGCAGGCTATCTGCTCTCGCCGAGTTCACCGTAGTTCCGGGTAGGATATACGGCTCTCTGCCACTGACATTATCTAACTTGAAGAGCCTCAGATTCCTCGGCATCGGCCGGAACTTCATTTCCGGCAAGATTCCGGGAACTCTGGGTCAGTTGCGCAATCTCAAAACCCTGGACCTCAGCTACAATCAGTTGACCGGAAGCATTCCTCCTTCCATCGGAGCATTAACGGGGTTGAACAATTTGATCCTCTGCCACAACCGCCTTTCCGGCTCGGTGCCTAAGTTTACATCGGAGACGCTAGCCCGGCTCGACCTGAAGCACAATGCTCTCTCCGGTTTGCTGGCTCCCGATTCTCTCCCGGCCTCCCTCCAATATCTGTCCCTATCATGGAACCAGTTGAGTGGGCCAGTGGATCGGCTGTTGAACCGGATGGACCAACTGAACTATCTGGATCTTAGCCTGAACAAGTTCTCGGGCATCATTCCAGGTCGGATATTCTCGTTTCCGCTCACCAATTTACAATTAGAAAGGAATGAATTTTTGGGGGTCGTCCAACCGGTTGATCAGGTGAAAATCCCAACCGTTGATCTGAGCTACAACAGGTTGTCGGGCCACGTGTCGCCCATGTTCTCGACCGTACAGAATCTATACCTCAACAACAACCGGTTCACGGGTCAGGTTCCGAGCAGCTTCGCGGATCGGTTATTGGATGCGACCATACAGATCCTCTACTTACAGCACAATTTTCTGACGGGGATAGCGATCAGTCCGACGGCGGAGATACCTCTAAGCAGCTCCTTGTGTCTACAGTATAATTGCATGGTCCCACCCATAGAGACCACTTGCCCTTTGAAGGCAGGGAAACAGATATCGAGGCCTTCTTCTCAGTGCGGGCAATGGAGGGGCTAA 1218 0.5189 MADQSLSWCGLGSYVLLFMCLIQIQSHLYVRAILDPVDFLALQSIRKALQDMPGSSFLSSWDFTSDPCKFAGVYCDSDKVIALNLGDPRAGAPGLTGKLDPAIGRLSALAEFTVVPGRIYGSLPLTLSNLKSLRFLGIGRNFISGKIPGTLGQLRNLKTLDLSYNQLTGSIPPSIGALTGLNNLILCHNRLSGSVPKFTSETLARLDLKHNALSGLLAPDSLPASLQYLSLSWNQLSGPVDRLLNRMDQLNYLDLSLNKFSGIIPGRIFSFPLTNLQLERNEFLGVVQPVDQVKIPTVDLSYNRLSGHVSPMFSTVQNLYLNNNRFTGQVPSSFADRLLDATIQILYLQHNFLTGIAISPTAEIPLSSSLCLQYNCMVPPIETTCPLKAGKQISRPSSQCGQWRG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2023 405 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Lele13g2023 405 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Lele13g2023 405 SUPERFAMILY L domain-like 36 286 - -
Lele13g2023 405 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515
Lele13g2023 405 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 15 405 - -
Lele13g2023 405 FunFam Nuclear pore complex protein NUP107 36 197 - -
Lele13g2023 405 SUPERFAMILY RNI-like 274 381 - -
Lele13g2023 405 Gene3D Ribonuclease Inhibitor 201 388 IPR032675 -
Lele13g2023 405 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2023 Lele-ChrLele13 27492144 27493361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2023 41 355 Receptor kinase-like Gene Family AT5G62230 31.024 2.92e-34 133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1527 05 9799646 9800809 Lele13g2023 13 27492144 27493361 CCT
Lele13g2023 13 27492144 27493361 Lele15g0381 15 2193305 2194522 hybridization
Lele13g2023 13 27492144 27493361 Lele16g0402 16 2191820 2193049 hybridization