Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0402 ATGGCGGATCAAGGGGTATCCTGGTGTGGCATTGGTTCGTACGTGCTGCTTTTCATGTGCTTGATACAGATACAGAGTCATTTATACGTGCGTGCCATTTTGGACCCTGTTGATTTCTTGGCCCTGCAATCCATTCGCAAGGCTCTGCAAGACATGCCGGGGTCCAGTTTCCTTTCTTCTTGGGATTTCACTTCCGACCCATGCAATTTCGCCGGCGTTTGCTGTGATTCCGATAAGGTCATTGCTCTCAATCTCGGGGATCCCGGAGCCGGTGCCCCTGGCCTAACCGGCAAACTCGACCCGGCCATCGGCAGGCTATCTGCTCTCGCTGAGTTCACGGTAGTTCCAGGTAGGATATACGGCTCTCTGCCACTGACATTAACTAACTTGAAGAACCTCAGATTCCTCGGCATCAGCCGGAACTTCATTTCCGGCGAGATTCCGGGGACGCTGGGTCAGTTGCGCAATCTCAGAACCCTGGACCTCAGCTACAATCAGTTGAGCGGAAGCATTCCTCCCTCCATCGGAGCATTACCGGGGTTGGACAATGTGATCCTCTGCCACAACCGCCTTTCCGGTTCGGTGCCTAAGTTTGCATCGCAGGCGCTAACCCGGCTCGACCTGAAGCACAATGCTCTCTCCGGTTCGCTGGCTCCCGATTCTCTCCCGGCCTCCCTCCAATATCTGTCTTTATCATGGAACCAGTTGAGTGGGCCAATGGATCGGCTGTTGAACCGGATGGACCAATTGAACTATCTGGATCTTAGCCTGAACAAGTTCTCGGGCATCATTCCGGGTCGGATATTCTCGTTTCCACTCACCAATTTACAATTAGAAAGGAATGAATTTTGGGGGGTCGTCCAACCGGTTGATCAGGTGAAAATCTCAACCGTCGACCTGAGCTACAACAGGTTGTCGGGCCAAGTGTCGCCCATGTTCTCGACCGTACAGAATCTATACCTCAACAACAACCGGTTCACGGGTCAGGTTCCGAGCAGCTTCGCGGATCGGTTACTGGATGCGACCATACAGATCCTCTACTTACAGCACAATTTTCTGACGGAGATAGCGATCAGTCCGACGGCGGAGATTCCTCTAAGCAGCTCCTTGTGTCTACAGTATAATTGCATGGTCCCACCCATAGAGACCACTTGCCCTTTGAAGGCCGGGAAACAGATATCTAGGCCTTCTTCTCAGTGCAGCCAATGGAGGGGCCAAACTAAACAGTAA 1230 0.5252 MADQGVSWCGIGSYVLLFMCLIQIQSHLYVRAILDPVDFLALQSIRKALQDMPGSSFLSSWDFTSDPCNFAGVCCDSDKVIALNLGDPGAGAPGLTGKLDPAIGRLSALAEFTVVPGRIYGSLPLTLTNLKNLRFLGISRNFISGEIPGTLGQLRNLRTLDLSYNQLSGSIPPSIGALPGLDNVILCHNRLSGSVPKFASQALTRLDLKHNALSGSLAPDSLPASLQYLSLSWNQLSGPMDRLLNRMDQLNYLDLSLNKFSGIIPGRIFSFPLTNLQLERNEFWGVVQPVDQVKISTVDLSYNRLSGQVSPMFSTVQNLYLNNNRFTGQVPSSFADRLLDATIQILYLQHNFLTEIAISPTAEIPLSSSLCLQYNCMVPPIETTCPLKAGKQISRPSSQCSQWRGQTKQ 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0402 409 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Lele16g0402 409 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Lele16g0402 409 Gene3D Ribonuclease Inhibitor 201 385 IPR032675 -
Lele16g0402 409 FunFam Nuclear pore complex protein NUP107 36 197 - -
Lele16g0402 409 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Lele16g0402 409 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 16 405 - -
Lele16g0402 409 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515
Lele16g0402 409 SUPERFAMILY L domain-like 55 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0402 Lele-ChrLele16 2191820 2193049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0402 41 336 Receptor kinase-like Gene Family AT5G62230 30.671 9.53e-34 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1527 05 9799646 9800809 Lele16g0402 16 2191820 2193049 CCT
Lele13g2023 13 27492144 27493361 Lele16g0402 16 2191820 2193049 hybridization
Lele14g1957 14 25835333 25836562 Lele16g0402 16 2191820 2193049 hybridization