Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1556 ATGACGCTTCCTGCTGGGTATTTGGAAATTGGAGAGTCAGCTATGGAAGGTGCTATCAGGGAAACAAGGGAGGAAGCAAATGCTGAAGTAGAAGTTCTGTCTCCTTTCGCTCAATTGGACGTTCCTCTAATTGGCCAAACTTATACAATCTTCTTATCTAAGCTAAAGAAGCCCCACTTTTCCCCTGGTCCAGAGTCATCAGAATTCTGGCTTTTCTCGCTTGATGATATACCTTTTGATTCTCTGTCATTTTCATCAATGGTGGTTACCTTAAGTATGTATGCTGAGGATATTAAGTCTGGAAAGCTCAAATTCCATTATGGCACTATTAACAAAAGATACAAAATCCTCCATAGTGATGAAAATCTTGTTGGTTTTAGCACTATGAAAATTACAAGATTTATATCCGGAAGTTGTAACCTGAAGAACCTTAAGCGAGAATGCAGTCTACTAATCTGTGTTGAGCAGTATCTTTACGGCATCTACATTCAACCCATAATTTTCAAAATCAGCTGGCCATCGCGTGGAAAATAG 534 0.3933 MTLPAGYLEIGESAMEGAIRETREEANAEVEVLSPFAQLDVPLIGQTYTIFLSKLKKPHFSPGPESSEFWLFSLDDIPFDSLSFSSMVVTLSMYAEDIKSGKLKFHYGTINKRYKILHSDENLVGFSTMKITRFISGSCNLKNLKRECSLLICVEQYLYGIYIQPIIFKISWPSRGK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1556 177 Pfam NUDIX domain 3 77 IPR000086 -
Lele13g1556 177 PANTHER NUDIX HYDROLASE 23 2 120 - -
Lele13g1556 177 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 123 - -
Lele13g1556 177 ProSiteProfiles Nudix hydrolase domain profile. 1 95 IPR000086 -
Lele13g1556 177 SUPERFAMILY Nudix 2 97 IPR015797 -
Lele13g1556 177 ProSitePatterns Nudix box signature. 6 27 IPR020084 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1556 Lele-ChrLele13 24684782 24686191 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0794 06 4899165 4901222 Lele13g1556 13 24684782 24686191 CCT
Lele07g0970 07 5805453 5809404 Lele13g1556 13 24684782 24686191 CCT
Lele08g0787 08 4919684 4925753 Lele13g1556 13 24684782 24686191 CCT
Lele13g1556 13 24684782 24686191 Lele15g0869 15 5032001 5034224 hybridization
Lele13g1556 13 24684782 24686191 Lele16g0888 16 5013574 5015294 hybridization