Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0097 ATGGCAACGTCCACGGTGCAGCTTCCAGCTGCGCAAGCAAGCACCCCTAGGAAGAAAATGACGAAACAGTTGACAGGAAAGAGGGATGATAGCCCTCTACATACAGCAGCAAGATCAGGAAATATGGCCGTTGTGAAGGAGATCCTTACTGGCACTGAAGAAGAATCTGAACTCAATGTATTGTTAGCTAAGCAAAATCAAGCTGGAGAAACAGCTCTCTATGTTGCTGCTGAATATGGTTATGTTGAATTAGTTAGGGAGATGATGAAATATTATGATCTTGCCAATGCTGGAATTAAAGCTAGAAATGGTTTTGATGCATTCCTCATTGCTGCAAAACAAGGCGATTTAGATGTACTGAAGATCCATATGGAGGTTCATCCTGAATTATCCATGACAGTGGATCCATCAAACACCACAGCTTTGCACATGGCAGCAACACAGGGGCACACAGAGGTGGTGAATTTTCTATTGGAAGCAGGAAGTAGCATAGCAACCATTGCCAGAAGTAATGGGAAAACAGCCCTACATTCTGCTGCAAGAAATGGGCATTTGGAGGTTGTTAAAGCGATTCTGGAGAAGGAGCCAACGGTTGCGACGAGGACCGATAAGAAGGGCCAAACAGCACTTCACATGGCTGTGAAGGGACAAAACATTGAGATAGTTGAAGAGTTGATAAAAGCAGATCCTTTGTCAATTAACATGGTTGATAACAAGGGAAACACAGCATTGCACATTGCTACAAGGAAAGGCAGGACTCAGATTGTCAAGATGCTTCTTGGACAGAGGGAAACGGACAAAACGGCTGTTAACAGAAGTGGTGAGACAGCGATTGACACTGCAGAGAAAACTGGGAACGCTGAAATTAAAGCCATTTTAGAAGAACATGGTGTGCAGAGTGCCAAGAACATAAAGCCTCAATCTGCCACAAACACAGCACGTGAACTGAAACAAACAGTGAGTGACATAAAACACGAAGTGCATTACCAATTGGAACACACACGACAAACCAGAAAACGAGTCCAAGGCATAGCCAAACGTATAAACAAAATGCATGCAGAAGGGCTTAACAACGCTATAAACTCCACAACTGTGGTGGCAGTACTAATCGCCACCGTGGCCTTTGCCGCAATATTCACAGTTCCAGGCCAGTACGTTGATGACCCAAAAGAGATACCTCCCGGAGAGACCTTAGGCGAAGCAAACATAGCTCCACAAGTTCCGTTCATAATTTTCTTCGTGTTTGATTCCATAGCGCTCTTCATATCTCTGGCCGTCGTGGTGGTGCAAACGTCGGTGGTGGTAATAGAGAGCAAAGCGAAGAAGCAGATGATGGCGATTATTAACAAGCTAATGTGGCTGGCGTGTGTTCTGATAACGGTGGCGTTCTTGGCGTTGGCGTTTGTTGTGGTGGGGAAGCATGAGAGGTGGCTGGCGATAGGAGTGACGATAATAGGGACAACAATAATGGCGACAACGTTGGGGACGATGTCGTATTGGGTGATTAGGCATCGGATTGAGGCCTCAAATTTGAGGAGCATTAGGAGATCTTCTCTGGGCAGCAGGTCGAGGTCTTTTTCAGTGTCGGTCATGTCAGATTCTGAGCTACTCAATAAAATGTATGCCATTTAG 1632 0.454 MATSTVQLPAAQASTPRKKMTKQLTGKRDDSPLHTAARSGNMAVVKEILTGTEEESELNVLLAKQNQAGETALYVAAEYGYVELVREMMKYYDLANAGIKARNGFDAFLIAAKQGDLDVLKIHMEVHPELSMTVDPSNTTALHMAATQGHTEVVNFLLEAGSSIATIARSNGKTALHSAARNGHLEVVKAILEKEPTVATRTDKKGQTALHMAVKGQNIEIVEELIKADPLSINMVDNKGNTALHIATRKGRTQIVKMLLGQRETDKTAVNRSGETAIDTAEKTGNAEIKAILEEHGVQSAKNIKPQSATNTARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYVDDPKEIPPGETLGEANIAPQVPFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLITVAFLALAFVVVGKHERWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRRSSLGSRSRSFSVSVMSDSELLNKMYAI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0097 543 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 11 527 - -
Lele12g0097 543 MobiDBLite consensus disorder prediction 1 35 - -
Lele12g0097 543 Gene3D - 7 125 IPR036770 -
Lele12g0097 543 ProSiteProfiles Ankyrin repeat profile. 171 203 IPR002110 GO:0005515
Lele12g0097 543 ProSiteProfiles Ankyrin repeat region circular profile. 137 164 - -
Lele12g0097 543 ProSiteProfiles Ankyrin repeat profile. 239 260 IPR002110 GO:0005515
Lele12g0097 543 ProSiteProfiles Ankyrin repeat profile. 137 169 IPR002110 GO:0005515
Lele12g0097 543 MobiDBLite consensus disorder prediction 1 20 - -
Lele12g0097 543 SUPERFAMILY Ankyrin repeat 32 298 IPR036770 -
Lele12g0097 543 SMART ANK_2a 205 235 IPR002110 GO:0005515
Lele12g0097 543 SMART ANK_2a 68 97 IPR002110 GO:0005515
Lele12g0097 543 SMART ANK_2a 28 60 IPR002110 GO:0005515
Lele12g0097 543 SMART ANK_2a 239 269 IPR002110 GO:0005515
Lele12g0097 543 SMART ANK_2a 137 166 IPR002110 GO:0005515
Lele12g0097 543 SMART ANK_2a 171 200 IPR002110 GO:0005515
Lele12g0097 543 SMART ANK_2a 103 132 IPR002110 GO:0005515
Lele12g0097 543 Gene3D - 126 326 IPR036770 -
Lele12g0097 543 ProSiteProfiles Ankyrin repeat region circular profile. 205 227 - -
Lele12g0097 543 ProSiteProfiles Ankyrin repeat profile. 205 227 IPR002110 GO:0005515
Lele12g0097 543 ProSiteProfiles Ankyrin repeat region circular profile. 239 260 - -
Lele12g0097 543 ProSiteProfiles Ankyrin repeat region circular profile. 171 194 - -
Lele12g0097 543 Pfam Ankyrin repeats (3 copies) 20 91 IPR002110 GO:0005515
Lele12g0097 543 Pfam Ankyrin repeats (3 copies) 109 195 IPR002110 GO:0005515
Lele12g0097 543 Pfam Ankyrin repeats (3 copies) 205 269 IPR002110 GO:0005515
Lele12g0097 543 Pfam Domain of unknown function 354 469 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0097 Lele-ChrLele12 819470 821855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0097 11 543 Miscellaneous Gene Families AT1G07710 75.047 0.0 764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0097 12 819470 821855 Lele29g0173 29 946961 951333 CCT
Lele12g0097 12 819470 821855 Lele31g1380 31 19612792 19617122 CCT
Lele09g1224 09 21127865 21130276 Lele12g0097 12 819470 821855 hybridization
Lele10g1200 10 23146531 23148916 Lele12g0097 12 819470 821855 hybridization