Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1224 ATGGCAACGTCCACCACGGTGCAGCTTCCAGCTGCGCAAGCAGCAAGCACCCCTAGGAAGAAAATGACGAAACAGTTGACAGGGAAGAGGGATGATAGCCCTCTACACACAGCAGCAAGATCAGGAAATATGGCTGTGGCGAAGGAGATCCTTACGGGCACTGAAGAAGAATCTGAACTCAATGTATTGTTGGCTAAGCAAAATCAAGCTGGTGAAACAGCTCTTTATGTTGCTGCTGAATATGGTTATGTTGAATTAGTTAGGGAGATGATCGAATATTATGATCTTGCCAATGCTGGAACTAAAGCTAGAAATGGTTTTGACGCATTACTCATTGCTGCCAAACAAGGCGATTTAGATGTATTGAAGATCCTTATGAAGGCTCATCCTGAATTATCCATGACAGTGGATCCATCAAACACCACAGCTTTGCACATGGCAGCAACCCAGGGGCACACAGAGGTGGTGAATTTTCTATTGGAAGCAGGAAGTAGCATAGCAACCATTGCCAGAAGTAATGGGAAAACAGCCCTGCATTCTGCTGCAAGAAATGGGCATTTGGAGGTTGTTAAAGCGATTCTGGAGAAGGAGCCTACGGTTGCAACGAGGACCGATAAGAAGGGACAGACAGCACTTCACATGGCTGTGAAGGGACAAAACCTTGAGGTAGTGGAAGAGTTGATAAAAGCAGAGCCTTCATCAATTAACATGGTTGATAACAAGGGAAACACAGCATTGCATATAGCTACGAGGAAAGGCAGGACTCGGATTGTCAAGATGCTTCTTGGACGGAGGGAAACAGACAAAATGGCGGTTAACAGAAGTGGTGAGACTGCGGTTGACACTGCAGAGAAAACTGGGAACGCTGAAATTAAAGCCATTCTAGAAGAACATGGCGTGCAGAGTGCCAAGAACATAAAGCCACAATCTGCCACAAACACAGCACGTGAACTGAAACAAACAGTGAGTGACATAAAGCACGAGGTACATTACCAATTGGAGCACACACGACAAACCAGAAAACGAGTCCAAGGCATAGCCAAACGTATAAACAAAATGCATGCAGAAGGGCTTAACAACGCTATAAACTCCACAACCGTGGTGGCAGTACTAATCGCCACCGTGGCCTTTGCTGCTATATTCACAGTTCCCGGCCAGTACGTTGATGACCCAAAAGAGATACCTCCGGGAGAGACCTTAGGCGAAGCAAACATAGCCCCACAAGTTCCGTTCATCATTTTCTTTGTGTTTGATTCCATAGCCCTCTTCATATCTCTGGCCGTCGTGGTGGTGCAGACGTCGGTGGTGGTGATAGAGAGCAAAGCGAAGAAGCAGATGATGGCGATTATTAACAAGCTAATGTGGCTGGCGTGTGTGCTGATAACGGTGGCGTTCTTGGCGTTGGCGTTTGTGGTGGTGGGGAAGCATGAGAGGTGGCTGGCTATCGGAGTGACGATAATAGGGACAACAATAATGGCGACAACGTTGGGGACGATGTCGTATTGGGTGATTAGGCATCGGATTGAGGCCTCAAATTTGAGGAGCATTAGGAGATCTTCTCTGGGAAGCAGGTCCAGGTCCTTTTCAGTGTCGGTCATGTCAGATTCTGAGTTACTAAATAGAATGTATGCCATTTAG 1638 0.4683 MATSTTVQLPAAQAASTPRKKMTKQLTGKRDDSPLHTAARSGNMAVAKEILTGTEEESELNVLLAKQNQAGETALYVAAEYGYVELVREMIEYYDLANAGTKARNGFDALLIAAKQGDLDVLKILMKAHPELSMTVDPSNTTALHMAATQGHTEVVNFLLEAGSSIATIARSNGKTALHSAARNGHLEVVKAILEKEPTVATRTDKKGQTALHMAVKGQNLEVVEELIKAEPSSINMVDNKGNTALHIATRKGRTRIVKMLLGRRETDKMAVNRSGETAVDTAEKTGNAEIKAILEEHGVQSAKNIKPQSATNTARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYVDDPKEIPPGETLGEANIAPQVPFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLITVAFLALAFVVVGKHERWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRRSSLGSRSRSFSVSVMSDSELLNRMYAI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1224 545 Gene3D - 170 350 IPR036770 -
Lele09g1224 545 SMART ANK_2a 30 62 IPR002110 GO:0005515
Lele09g1224 545 SMART ANK_2a 105 134 IPR002110 GO:0005515
Lele09g1224 545 SMART ANK_2a 173 202 IPR002110 GO:0005515
Lele09g1224 545 SMART ANK_2a 207 237 IPR002110 GO:0005515
Lele09g1224 545 SMART ANK_2a 139 168 IPR002110 GO:0005515
Lele09g1224 545 SMART ANK_2a 241 271 IPR002110 GO:0005515
Lele09g1224 545 SMART ANK_2a 70 99 IPR002110 GO:0005515
Lele09g1224 545 Pfam Domain of unknown function 356 471 IPR026961 -
Lele09g1224 545 ProSiteProfiles Ankyrin repeat region circular profile. 207 229 - -
Lele09g1224 545 ProSiteProfiles Ankyrin repeat region circular profile. 173 196 - -
Lele09g1224 545 SUPERFAMILY Ankyrin repeat 34 300 IPR036770 -
Lele09g1224 545 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 14 529 - -
Lele09g1224 545 MobiDBLite consensus disorder prediction 1 37 - -
Lele09g1224 545 ProSiteProfiles Ankyrin repeat profile. 207 229 IPR002110 GO:0005515
Lele09g1224 545 MobiDBLite consensus disorder prediction 1 22 - -
Lele09g1224 545 ProSiteProfiles Ankyrin repeat profile. 173 205 IPR002110 GO:0005515
Lele09g1224 545 ProSiteProfiles Ankyrin repeat region circular profile. 241 262 - -
Lele09g1224 545 ProSiteProfiles Ankyrin repeat profile. 241 262 IPR002110 GO:0005515
Lele09g1224 545 Pfam Ankyrin repeats (3 copies) 100 166 IPR002110 GO:0005515
Lele09g1224 545 Pfam Ankyrin repeats (3 copies) 173 237 IPR002110 GO:0005515
Lele09g1224 545 Pfam Ankyrin repeats (3 copies) 14 93 IPR002110 GO:0005515
Lele09g1224 545 ProSiteProfiles Ankyrin repeat profile. 139 171 IPR002110 GO:0005515
Lele09g1224 545 ProSiteProfiles Ankyrin repeat region circular profile. 139 166 - -
Lele09g1224 545 Pfam Ankyrin repeat 242 263 IPR002110 GO:0005515
Lele09g1224 545 Gene3D - 5 169 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1224 Lele-ChrLele09 21127865 21130276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1224 14 545 Miscellaneous Gene Families AT1G07710 74.627 0.0 758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1224 09 21127865 21130276 Lele11g1224 11 19330330 19332742 hybridization
Lele09g1224 09 21127865 21130276 Lele12g0097 12 819470 821855 hybridization