Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1224 ATGGCAACGTCCACCACGGTACAGCTTCCAGCTGCGCAAGCAGTAAGCACCCCTAGGAAGAAAATGACGAAACAGTTGACAGGGAAGAGGGATGATAGCCCTCTACACACAGCAGCAAGATCAGGAAATATGGCTGTTGCGAAAGAGATCCTTACGGGCACCGAAGAAGAATCTGAACTCAATGTATTGTTGGCTAAGCAAAATCAAGCTGGTGAAACACCTCTTTATGTTGCTGCTGAATATGGTTATGTTGAATTAGTTAGGGAGATGATCAAATATTATGATCTTGCCAATGCTGGAACTAAAGCTAGAAATGGTTTTGACGCATTCCTCATAGCTGCCAAACAAGGCGATTTAGATGTATTGAAGATCCTTATGGAGGCTCATCCTGAATTATCCATGACAGTGGATCCATCAAACACCACAGCTTTGCACATGGCAGCAACCCAGGGGCACATAGAGGTGGTGAATTTTCTATTGGAAGCAGGAAGTAGCATAGCAACCATTGCCAGAAGTAATGGGAAAACAGCCCTGCATTCTGCTGCAAGAAATGGGCATTTGGAGGTTGTTAAAGCGATTCTGGAGAAGGAGCCTACGGTTGCAACGAGGACCGATAAGAAGGGACAGACAGCACTTCACATGGCTGTGAAGGGACAAAACCTTGAGGTAGTGGAAGAGTTGATAAAGGCAGATCCTTTATCAATTAACATGGTTGATAACAAGGGAAACACAGCATTGCATATAGCTACGAGGAAAGGCAGGACTCAGATTGTCAAGATGCTTCTTGGACGGAGGGAAACAGACAAAATGGCCGTTAACAGAAGTGGTGAGACTGCGGTTGACACTGCAGAGAAAACTGGGAACGCTGAAATTAAAGCCATTCTAGATGAACATGGCGTGCAGAGTGCCAAGAACATAAAGCCACAATCTGCCACAAACACAGCACGTGAACTGAAACAAACAGTGAGTGACATAAAGCACGAGGTACATTACCAATTGGAGCACACACGACAAACCAGAAAACGAGTCCAAGGCATAGCCAAACGTATAAACAAAATGCATGCAGAAGGGCTTAACAACGCTATAAACTCCACAACCGTGGTGGCAGTACTAATCGCCACTGTGGCCTTTGCTGCTATATTCACAGTTCCCGGCCAGTACGTTGATGACCCAAAAGAGATACCTCCGGGAGAGACCTTAGGCGAAGCAAACATAGCCCCACAAGTTCCGTTCATCATTTTCTTTGTGTTTGATTCCATAGCCCTCTTCATATCTCTGGCCGTCGTGGTGGTGCAGACGTCGGTGGTGGTGATAGAGAGCAAAGCGAAGAAGCAGATGATGGCGATTATTAACAAGCTAATGTGGCTGGCGTGTGTGCTGATAACGGTGGCGTTCTTGGCGTTGGCGTTTGTGGTGGTGGGGAAGCATGAGAGGTGGCTGGCTATCGGAGTGACGATAATAGGGACAACAATAATGGCGACAACGTTGGGGACGATGTCGTATTGGGTGATTAGGCATCGGATTGAGGCCTCAAATTTGAGGAGCATTAGGAGATCTTCTCTGGGAAGCAGGTCCAGGTCCTTTTCAGTGTCGGTCATGTCAGATTCTGAGTTACTAAATAGAATGTATGCCATTTAG 1638 0.4646 MATSTTVQLPAAQAVSTPRKKMTKQLTGKRDDSPLHTAARSGNMAVAKEILTGTEEESELNVLLAKQNQAGETPLYVAAEYGYVELVREMIKYYDLANAGTKARNGFDAFLIAAKQGDLDVLKILMEAHPELSMTVDPSNTTALHMAATQGHIEVVNFLLEAGSSIATIARSNGKTALHSAARNGHLEVVKAILEKEPTVATRTDKKGQTALHMAVKGQNLEVVEELIKADPLSINMVDNKGNTALHIATRKGRTQIVKMLLGRRETDKMAVNRSGETAVDTAEKTGNAEIKAILDEHGVQSAKNIKPQSATNTARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYVDDPKEIPPGETLGEANIAPQVPFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLITVAFLALAFVVVGKHERWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRRSSLGSRSRSFSVSVMSDSELLNRMYAI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1224 545 Pfam Ankyrin repeats (3 copies) 91 166 IPR002110 GO:0005515
Lele11g1224 545 Pfam Ankyrin repeats (3 copies) 171 236 IPR002110 GO:0005515
Lele11g1224 545 ProSiteProfiles Ankyrin repeat region circular profile. 241 262 - -
Lele11g1224 545 SUPERFAMILY Ankyrin repeat 34 300 IPR036770 -
Lele11g1224 545 Pfam Domain of unknown function 356 471 IPR026961 -
Lele11g1224 545 ProSiteProfiles Ankyrin repeat region circular profile. 207 229 - -
Lele11g1224 545 ProSiteProfiles Ankyrin repeat region circular profile. 173 196 - -
Lele11g1224 545 ProSiteProfiles Ankyrin repeat profile. 207 229 IPR002110 GO:0005515
Lele11g1224 545 ProSiteProfiles Ankyrin repeat region circular profile. 139 166 - -
Lele11g1224 545 MobiDBLite consensus disorder prediction 1 22 - -
Lele11g1224 545 ProSiteProfiles Ankyrin repeat profile. 173 205 IPR002110 GO:0005515
Lele11g1224 545 ProSiteProfiles Ankyrin repeat profile. 70 92 IPR002110 GO:0005515
Lele11g1224 545 ProSiteProfiles Ankyrin repeat region circular profile. 70 92 - -
Lele11g1224 545 Pfam Ankyrin repeat 242 263 IPR002110 GO:0005515
Lele11g1224 545 Gene3D - 170 343 IPR036770 -
Lele11g1224 545 ProSiteProfiles Ankyrin repeat profile. 139 171 IPR002110 GO:0005515
Lele11g1224 545 MobiDBLite consensus disorder prediction 1 39 - -
Lele11g1224 545 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 13 529 - -
Lele11g1224 545 ProSiteProfiles Ankyrin repeat profile. 241 262 IPR002110 GO:0005515
Lele11g1224 545 Gene3D - 8 169 IPR036770 -
Lele11g1224 545 SMART ANK_2a 173 202 IPR002110 GO:0005515
Lele11g1224 545 SMART ANK_2a 30 62 IPR002110 GO:0005515
Lele11g1224 545 SMART ANK_2a 105 134 IPR002110 GO:0005515
Lele11g1224 545 SMART ANK_2a 70 99 IPR002110 GO:0005515
Lele11g1224 545 SMART ANK_2a 207 237 IPR002110 GO:0005515
Lele11g1224 545 SMART ANK_2a 139 168 IPR002110 GO:0005515
Lele11g1224 545 SMART ANK_2a 241 271 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1224 Lele-ChrLele11 19330330 19332742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1224 16 545 Miscellaneous Gene Families AT1G07710 75.094 0.0 758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1224 11 19330330 19332742 Lele29g0173 29 946961 951333 CCT
Lele11g1224 11 19330330 19332742 Lele31g1380 31 19612792 19617122 CCT
Lele09g1224 09 21127865 21130276 Lele11g1224 11 19330330 19332742 hybridization
Lele10g1200 10 23146531 23148916 Lele11g1224 11 19330330 19332742 hybridization