Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g1225 ATGAAACAGTTTGCGGGCGCCACTGTTTTAAGGGCTCCAACGGGCTGCTGCTTGGTTTCTCGTGGCAATCGGAAGAAAAACAAAACGATGGGGAGAAAGTTCTTCGTTGGTGGCAACTGGAAATGCAACGGGACCAACGATGAGGTGAAGAAGATTATTACTACTTTGAACGAAGCTCAAGTTCCTGGGGAAGATGTTGTGGAAGTTGTTGTTAGCCCTCCCTTCGTATTCCTTCCTCTTGTGAAAGGTTTGTTGCGGCCTGACTTCCATGTTGCAGCACAAAATTGTTGGGTTCGCAAGGGTGGTGCTTTTACTGGAGAGGTCAGCGCCGAAATGCTTGTTAATTTGGGTGTCCCTTGGGTCATTCTTGGTCACTCAGAACGGAGGCAGCTTTTAAATGAATCAAATGAGTTTGTGGGCGATAAAGTTGCATATGCACTTTCTCAAGGTTTGAAAGTTATTGCTTGCATAGGGGAGACTCTTGAACAACGTGAGGCAGGTTCAACAATGGCTGTTGTTGCTGAGCAAACAAAAGCGATTGCAGCTAAAATATCAAACTGGGATAACGTTGTTTTGGCCTATGAGCCAGTATGGGCCATTGGGACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAGGAGGTCCATGCCGAGTTAAGGAAATGGATTCATAGCAATGTTAGTGCTGAAGTCGCTTCATCTGTCAGAATTATCTATGGAGGTTCTGTTAATGGAGGAAACTGTAAAGAATTGGCAGGGCAGCCAGATGTTGATGGTTTTTTGGTTGGCGGTGCTTCTTTGAAGCCGGAGTTCGTTGACATTATCAAGTCTGCCACTGTGAAGAATTGA 846 0.4598 MKQFAGATVLRAPTGCCLVSRGNRKKNKTMGRKFFVGGNWKCNGTNDEVKKIITTLNEAQVPGEDVVEVVVSPPFVFLPLVKGLLRPDFHVAAQNCWVRKGGAFTGEVSAEMLVNLGVPWVILGHSERRQLLNESNEFVGDKVAYALSQGLKVIACIGETLEQREAGSTMAVVAEQTKAIAAKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWIHSNVSAEVASSVRIIYGGSVNGGNCKELAGQPDVDGFLVGGASLKPEFVDIIKSATVKN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g1225 281 CDD TIM 34 275 IPR000652 GO:0004807
Lele10g1225 281 Hamap Triosephosphate isomerase [tpiA]. 32 276 IPR022896 GO:0004807|GO:0006096
Lele10g1225 281 ProSitePatterns Triosephosphate isomerase active site. 193 203 IPR020861 GO:0004807
Lele10g1225 281 Gene3D Aldolase class I 18 280 IPR013785 -
Lele10g1225 281 PANTHER TRIOSEPHOSPHATE ISOMERASE 31 276 IPR000652 GO:0004807
Lele10g1225 281 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 33 276 IPR000652 GO:0004807
Lele10g1225 281 FunFam Triosephosphate isomerase 30 278 - -
Lele10g1225 281 SUPERFAMILY Triosephosphate isomerase (TIM) 28 275 IPR035990 GO:0004807
Lele10g1225 281 Pfam Triosephosphate isomerase 35 276 IPR000652 GO:0004807
Lele10g1225 281 TIGRFAM tim: triose-phosphate isomerase 35 269 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g1225 Lele-ChrLele10 23343765 23347398 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g1225 10 23343765 23347398 Lele29g0132 29 735222 737939 CCT
Lele10g1225 10 23343765 23347398 Lele30g1270 30 15267675 15269651 CCT
Lele10g1225 10 23343765 23347398 Lele31g1421 31 19822838 19824523 CCT
Lele10g1225 10 23343765 23347398 Lele32g0126 32 711824 714428 CCT
Lele10g1225 10 23343765 23347398 Lele11g1252 11 19513944 19516594 hybridization
Lele10g1225 10 23343765 23347398 Lele12g0072 12 622865 626744 hybridization