Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0072 ATGAAATCGAAATTCCTAGCTGATTTTGTCAAGTGCAGGGAATACGATGAGTCACAAAAACTTGTGACCCTAGCCGCTCATTCATTCCTTCCTTTCTGGCGGACCCATCCATATGACAAATCTGAGAACTGCCGCTGTAGCTGCTTCGTTTCTCGTTGCAATCGGAAGAAAAACAAAACGATGGGGAGAAAGTTCTTCGTTGGTGGCAACTGGAAATGTAACGGAACCAACGATGAGGTGAAGAAGATTATTACTACTTTGAATGAAGCTCAAGTTCCTGGGGAAGATGTTGTGGAAGTTGTTGTTAGCCCTCCCTTCGTATTCCTTCCTCTTGTGAAAGGTTTGTTGCGGCCTGACTTCCATGTTGCAGCACAAAATTGTTGGGTTCGCAAGGGTGGTGCTTTTACTGGAGAGGTCAGCGCCGAAATGCTTGTTAATTTGGGTGTCCCTTGGGTCATTCTTGGTCACTCAGAACGGAGGCAGCTTTTAAATGAATCAAATGAGTTTGTGGGCGATAAAGTTGCATATGCACTTTCTCAAGGTTTGAAAGTTATTGCTTGCATAGGGGAGACTCTTGAACAACGTGAGTCAGGTTCAACAATGGCTGTTGTTGCTGAGCAAACAAAAGCGATTGCAGCTAAAATATCAAACTGGGATAACGTTGTTTTGGCCTATGAGCCAGTATGGGCCATTGGGACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAGGAGGTCCATGCCGAGTTAAGGAAATGGATTCATAGCAATGTTAGTGCTGAAGTCGCTTCATCACTCAGAATTATCTATGGAGGTTCTGTTAATGGAGGAAACTGTAAAGAATTGGCAGGGCAGCCAGATGTTGATGGTTTTTTGGTTGGCGGTGCTTCTTTGAAGCCGGAGTTCGTTGACATTATCAAGTCTGCCACTGTGAAGAATTGA 939 0.4483 MKSKFLADFVKCREYDESQKLVTLAAHSFLPFWRTHPYDKSENCRCSCFVSRCNRKKNKTMGRKFFVGGNWKCNGTNDEVKKIITTLNEAQVPGEDVVEVVVSPPFVFLPLVKGLLRPDFHVAAQNCWVRKGGAFTGEVSAEMLVNLGVPWVILGHSERRQLLNESNEFVGDKVAYALSQGLKVIACIGETLEQRESGSTMAVVAEQTKAIAAKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWIHSNVSAEVASSLRIIYGGSVNGGNCKELAGQPDVDGFLVGGASLKPEFVDIIKSATVKN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0072 312 PANTHER TRIOSEPHOSPHATE ISOMERASE 62 307 IPR000652 GO:0004807
Lele12g0072 312 Gene3D Aldolase class I 46 311 IPR013785 -
Lele12g0072 312 TIGRFAM tim: triose-phosphate isomerase 66 300 IPR000652 GO:0004807
Lele12g0072 312 CDD TIM 65 306 IPR000652 GO:0004807
Lele12g0072 312 FunFam Triosephosphate isomerase 61 309 - -
Lele12g0072 312 Pfam Triosephosphate isomerase 66 307 IPR000652 GO:0004807
Lele12g0072 312 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 64 307 IPR000652 GO:0004807
Lele12g0072 312 ProSitePatterns Triosephosphate isomerase active site. 224 234 IPR020861 GO:0004807
Lele12g0072 312 SUPERFAMILY Triosephosphate isomerase (TIM) 59 306 IPR035990 GO:0004807
Lele12g0072 312 Hamap Triosephosphate isomerase [tpiA]. 63 307 IPR022896 GO:0004807|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0072 Lele-ChrLele12 622865 626744 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1249 09 21323614 21326296 Lele12g0072 12 622865 626744 hybridization
Lele10g1225 10 23343765 23347398 Lele12g0072 12 622865 626744 hybridization