Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1252 ATGGGGAGAAAGTTCTTCGTTGGTGGCAACTGGAAATGCAACGGGACCAACGAGGAGGTGAAGATTGTTACTACTTTGAATGAAGCTCAAGTTCCTGGGGAAGATGTTGTGGAAGTTGTTGTTAGCCCTCCCTTCGTATTCCTTCCTCTTGTGAAAGGTTTGTTGCGGCCTGACTTCCATGTCGCAGCACAAAATTGTTGGGTTCGCAAAGGTGGTGCTTTTACTGGAGAGGTCAGCGCCGAAATGCTTGTTAATTTGGGTGTCCCTTGGGTCATTCTTGGTCACTCGGAACGGAGGCAGCTTTTAAATGAATCAAATGAGTTTGTGGGCGATAAAGTCGCATATGCTCTTTCTCAAGGTTTGAAAGTTATTGCTTGCATTGGGGAGACTCTTGAACAACGTGAGGCAGGTTCAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCGATTGCAGCTAAAATATCAAACTGGGATAACGTTGTTTTGGCGTATGAGCCAGTATGGGCCATTGGGACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAGGAGGTCCATGCTGATTTAAGGAAATGGATTTATAGCAATGTCAGTGCTGAAGTCGCTTCATCTGTAAGAATTATCTATGGAGGTTCTGTTAATGGAGGAAACTGTAAAGAATTGGCAGGGCAGCCAGATGTTGATGGTTTTTTGGTTGGCGGGGCTTCTTTGAAGCCGGAGTTCGTTGACATTATCAAGTCTGCCACTGTGAAGAATTAA 756 0.4563 MGRKFFVGGNWKCNGTNEEVKIVTTLNEAQVPGEDVVEVVVSPPFVFLPLVKGLLRPDFHVAAQNCWVRKGGAFTGEVSAEMLVNLGVPWVILGHSERRQLLNESNEFVGDKVAYALSQGLKVIACIGETLEQREAGSTTAVVAEQTKAIAAKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHADLRKWIYSNVSAEVASSVRIIYGGSVNGGNCKELAGQPDVDGFLVGGASLKPEFVDIIKSATVKN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1252 251 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 4 246 IPR000652 GO:0004807
Lele11g1252 251 SUPERFAMILY Triosephosphate isomerase (TIM) 3 245 IPR035990 GO:0004807
Lele11g1252 251 Pfam Triosephosphate isomerase 6 246 IPR000652 GO:0004807
Lele11g1252 251 FunFam Triosephosphate isomerase 1 248 - -
Lele11g1252 251 Hamap Triosephosphate isomerase [tpiA]. 3 246 IPR022896 GO:0004807|GO:0006096
Lele11g1252 251 Gene3D Aldolase class I 1 250 IPR013785 -
Lele11g1252 251 CDD TIM 5 245 IPR000652 GO:0004807
Lele11g1252 251 ProSitePatterns Triosephosphate isomerase active site. 163 173 IPR020861 GO:0004807
Lele11g1252 251 TIGRFAM tim: triose-phosphate isomerase 6 239 IPR000652 GO:0004807
Lele11g1252 251 PANTHER TRIOSEPHOSPHATE ISOMERASE 3 246 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1252 Lele-ChrLele11 19513944 19516594 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1249 09 21323614 21326296 Lele11g1252 11 19513944 19516594 hybridization
Lele10g1225 10 23343765 23347398 Lele11g1252 11 19513944 19516594 hybridization