Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1249 ATGGGGAGAAAGTTCTTCGTTGGTGGCAACTGGAAATGCAACGGGACCAACGATGAGGTGAAGAAGATTGTTACTACTTTGAATGAAGCTCAAGTTCCTGGGGAAGATGTTGTGGAAGTTGTTGTTAGCCCTCCCTTCGTATTCCTTCCTCTTGTGAAAGGTTTGTTGCGGCCTGACTTCCATGTCGCAGCACAAAATTGTTGGGTTCGCAAAGGTGGTGCTTTTACTGGAGAGGTCAGCGCCGAAATGCTTGTTAATTTGGGTGTCCCTTGGGTCATTCTTGGTCACTCGGAACGGAGGCAGCTTTTAAATGAATCAAATGAGTTTGTGGGCGATAAAGTTGCATATGCTCTTTCTCAAGGTTTGAAAGTTATTGCTTGCGTTGGGGAGACTCTTGAACAACGTGAGGCAGGTTCAACAAATTCTGTTGTTGCTGAGCAAACAAAAGCGATTGCAGCTAAAATATCAAACTGGGATAACGTTGTTTTGGCCTATGAGCCAGTATGGGCCATTGGGACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAGGAGGTCCATGCTGAATTAAGGAAATGGATTCATAGCAATGTCAGTGCTGAAGTCGCTTCATCTGTCAGAATTATCTATGGAGGTTCTGTTAATGGAGGAAACTGTAAAGAATTGGCAGGGCAGCCAGATGTTGATGGTTTTTTGGTTGGCGGGGCTTCTTTGAAGCCGGAGTTCGTTGACATTATCAAGTCTGCCACTGTGAAGAATTGA 759 0.4545 MGRKFFVGGNWKCNGTNDEVKKIVTTLNEAQVPGEDVVEVVVSPPFVFLPLVKGLLRPDFHVAAQNCWVRKGGAFTGEVSAEMLVNLGVPWVILGHSERRQLLNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTNSVVAEQTKAIAAKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWIHSNVSAEVASSVRIIYGGSVNGGNCKELAGQPDVDGFLVGGASLKPEFVDIIKSATVKN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1249 252 ProSitePatterns Triosephosphate isomerase active site. 164 174 IPR020861 GO:0004807
Lele09g1249 252 TIGRFAM tim: triose-phosphate isomerase 6 240 IPR000652 GO:0004807
Lele09g1249 252 Hamap Triosephosphate isomerase [tpiA]. 3 247 IPR022896 GO:0004807|GO:0006096
Lele09g1249 252 FunFam Triosephosphate isomerase 1 249 - -
Lele09g1249 252 Gene3D Aldolase class I 1 251 IPR013785 -
Lele09g1249 252 SUPERFAMILY Triosephosphate isomerase (TIM) 3 246 IPR035990 GO:0004807
Lele09g1249 252 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 4 247 IPR000652 GO:0004807
Lele09g1249 252 PANTHER TRIOSEPHOSPHATE ISOMERASE 3 247 IPR000652 GO:0004807
Lele09g1249 252 Pfam Triosephosphate isomerase 6 247 IPR000652 GO:0004807
Lele09g1249 252 CDD TIM 5 246 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1249 Lele-ChrLele09 21323614 21326296 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1249 09 21323614 21326296 Lele29g0132 29 735222 737939 CCT
Lele09g1249 09 21323614 21326296 Lele30g1270 30 15267675 15269651 CCT
Lele09g1249 09 21323614 21326296 Lele31g1421 31 19822838 19824523 CCT
Lele09g1249 09 21323614 21326296 Lele32g0126 32 711824 714428 CCT
Lele09g1249 09 21323614 21326296 Lele11g1252 11 19513944 19516594 hybridization
Lele09g1249 09 21323614 21326296 Lele12g0072 12 622865 626744 hybridization