Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1356 ATGAAATGCGCAAATGTCGACCGTTCATCAAAGCATGGGAAAGTGGAGCCTTGTGTTTCATTTTTGTCCACTATGTTGCCGTTGAATTCCCTGAGATTGCAGCTCGCAGGGACGACGCCGGACCACATCGTATTCGATGCCGAGGATATTGAGTTCGGGACGTTATGGTGGTTCCTTTATGTCGGGATTTCTTGCCTTCTTGTCCTCTTCGCTGGCATCATGTCTGGTCTCACCCTCGGTCTTATGTCTCTGGGCATCGTTGACCTAGAAATTCTCCAGCGCACTGGCACTTCCAGAGAGAGAAAACAAGCAGCTGCTATATTGCCAGTTGTGCAGAAGCAGCATCAGCTGCTCGTTACTCTGCTTCTTTGCAATGCTTGCGCCATGGAGGCACTTCCAATTTACCTTGACAAAATTTTCCACCCTTTTGTTGCAGTAATACTGTCTGTAACATTTGTTCTGGCTTTTGGGGAGGTTATCCCACAAGCTATATGCTCAAGATTTAGGCTGTGTGTTGGTGCAAATTTCATTGGGGTGGTGCGTGTTCTGATGATAATCTGTTATCCAATTGCTTATCCCATTGGAAAGGTTCTGGATGCGGTTCTTGGACACAATGTTGTCTTGTTTAGGCGAGCACAATTGAAAGCCCTCGTTTCAATCCATAGTCTAGAGACTGCAGGAGAGGCAATGACACCAATTGAATCAACCTTTTCGTTGGATATTGATTCAAAGTTGGACTGGGAAGCAATTGGGAAAATTCTTTCAAAAGGTCATAGCCGTGTTCCTGTGTATTGTGGGAATCCCAGTAATATAATTGGCCTCTTACTAGTGAAAAGTCTTCTCACTGTGAGAGCCGAAACAGAAACTCGAGTTAGCGCAGTTACCATAAGAAGAATTCCTAGGGTTCCATCAGACATGCCTTTGTATGACATTCTGAATGAGTTCCAGAAAGGAAGTAGTCATATGGCGGCCGTAGTTAAGGCGAACAAGGAGAGAAATAACACTCAGGCTGGTGGTGAGAATGGGAAACTTGAGGAAGACAAGGTCATGAATCACAATTCTCAACTGCTGATGCCATTGCTAACCAAATCTTCTGAGAAAGCGGAAGATATCAGTATTGCTATTGACAAACCTCCTATGGTTCCCAAAAAGCAACAAAAAAATGGGACCCACCACTGGCTAGATAATCTTGAAGATGGGGAAGTTATTGGTATCATAACCCTAGAAGACGTTTTTGAAGAACTCCTACAGGAAGAAATAGTAGATGAGACAGACGTGTATGTTGATGTGCACAGAAGAATTCGTGTGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCATCTGTGGCACAAACTCCATCTGCTCGAAGGCTATTAGGCCACAAACCCACATCCCCACTTTTCCTGAGAAACAGAGACAACAAATACTTGAGGTGCCGTCTTTTTCGTGTGCTTCTTCCAGGTCTCCTTCTGAATTCCACTGCAATCACTCTAGTCAATAAGCTCCTGATGGGTTTCAACACGGTCTACAAATGCTTGCAGGAGATATTTCCACAGGTTGATGCCAGGATTCTCAGGGCTGTGGCTATTGAGCACGCTAAGGATGTTGACTTAGCTGCAGGAATTGTCTTGAATGAAGTCATTCCTCTAATGTCTAAAAGGTCCATGCCTCTTGCAACTCCTCCACATGATAAGGGTCCTGAAACTGTAGCAAATGTAGAAGTTGGACAAGGGAATAGGTCGAGGCATGAACAGTTTGTTGAGACTGTGGCTGCGGAAAATGTAGAAACTGCATCCTATTCTATGGGGCCACATAAAAGCCTGATTTTGGAAGGAACTGAAGTTCCAAATACTTGTAATTCCAATGGCAGTGCTGATAAGTTTCTCAAAATTAATGAAAGCGAGGAGCAATATACCTTGGGTAAGATTGGAGAAAACTTATCAGTAGACGTCACAAATAAGATTGCAGAGAATGCAGAAAATGGTTTGAAGCACAGTGCTAGTGGAAGCTGTGATCATGAACTAGAACGTGCAGATGTTGAGAGTGAAAAGCTGTTTTCCTGTGGCACGTGCCATGAAATGCAACTTGCTCCCTCAAACGACAATGGTAATGGAAAGGAGGGGAAATATTTTGCAGGTCCTATAACAGCTGATAATCATGATGCTATTACCTGTTCTATAAGCCAGAAATCTGTGAGTTGTGAACCTTCCTTGATTGAGGGAGAAAGCTCTGAGGTTGAAGAAGTCGATCAAGCTCAAAGACATTTGCCAAATTCTAAAGAGTGTGGTCTTCAATCAGAACTCGACGGTAGCACTCCTATTGCTGCGGAAAAAAATATGGAGGGTGCTTGTTCTTTTTCTGAACAAGAGTACCCTGTGAGCAAAGCCGGTGATGTTGAAGATGAGATCAGTGGGGAAGATGTGGTTAGCCAGTCTAATCAAGTATGCGGAATTGATCTGCTTGAAGAGATCATTGATGAAGCTAAAACTAATAAGAAAACCCTGTTCTCGTCAATGGAATCTCTTGTCAGCTTAATGAAAGAAGTGGAACTTCAGGAGAAAGCTGCAGAACAAGCCAAAATAGAAGCTGCACTTGGAGGATCTGAGATTCTTATTAATGTAGAACAACTGAAAAAGATGTTGATGCATGTGAAAGAAGCAAATGACATGCATGCAGGAGAAGTTTATGGAGAAAAGGCAATTTTAGCTACTGAAATGAAGGAACTTCAATCTCGTTTGCTCGGTTTGTCAGATGAAAAGAATAAATCACTTGCAAGTCTTGATGAGATGAGCCAATCTCTTCGAGTTCGGTTAGTTGCAGCTGAAGAACTGAGGAAAGCAGCTGAGCAGGAAAAGTTAGAAAAGGAGGAATCTGCGAGAAAGGATCTTGCTGAACAGGAAGCAATCATGGAGAGGGTGGTTCAAGAATCGACAAGACTGCAACTGGAAGCAGAAGAAAATTCCAAGTTGCGGGAGTTCCTCATTGACCGTGGACAAGTTGTGGATATGTTGCAGGGAGAAATTTCTGTTATTTTTCAGGACATCAGGATTCTCAAGGCGAAATTTGATGCAAATCTCCCCTTGAGCAAATCCTTCACCTCAAGCCAGACTAGCTGTATCTTAGCTTCGTCAGGTTCATCTCACAAAAGCTTGGCAACCGATGCTGGCTCATATCACAGTGATTCATCTGAAGTACTTAAGACAAAGTCAGCTTCCTCAATTGGTGAACTGTCCTCCGAAAGTGGGAATAAAGAGGAAAGTGCGAAAACTGAACATAAGGCTCCTCTAGATGATGAGTGGGACTTTATCATAGCGGAAGTATAA 3324 0.4347 MKCANVDRSSKHGKVEPCVSFLSTMLPLNSLRLQLAGTTPDHIVFDAEDIEFGTLWWFLYVGISCLLVLFAGIMSGLTLGLMSLGIVDLEILQRTGTSRERKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVILSVTFVLAFGEVIPQAICSRFRLCVGANFIGVVRVLMIICYPIAYPIGKVLDAVLGHNVVLFRRAQLKALVSIHSLETAGEAMTPIESTFSLDIDSKLDWEAIGKILSKGHSRVPVYCGNPSNIIGLLLVKSLLTVRAETETRVSAVTIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKANKERNNTQAGGENGKLEEDKVMNHNSQLLMPLLTKSSEKAEDISIAIDKPPMVPKKQQKNGTHHWLDNLEDGEVIGIITLEDVFEELLQEEIVDETDVYVDVHRRIRVAAAAAAAAAASSVAQTPSARRLLGHKPTSPLFLRNRDNKYLRCRLFRVLLPGLLLNSTAITLVNKLLMGFNTVYKCLQEIFPQVDARILRAVAIEHAKDVDLAAGIVLNEVIPLMSKRSMPLATPPHDKGPETVANVEVGQGNRSRHEQFVETVAAENVETASYSMGPHKSLILEGTEVPNTCNSNGSADKFLKINESEEQYTLGKIGENLSVDVTNKIAENAENGLKHSASGSCDHELERADVESEKLFSCGTCHEMQLAPSNDNGNGKEGKYFAGPITADNHDAITCSISQKSVSCEPSLIEGESSEVEEVDQAQRHLPNSKECGLQSELDGSTPIAAEKNMEGACSFSEQEYPVSKAGDVEDEISGEDVVSQSNQVCGIDLLEEIIDEAKTNKKTLFSSMESLVSLMKEVELQEKAAEQAKIEAALGGSEILINVEQLKKMLMHVKEANDMHAGEVYGEKAILATEMKELQSRLLGLSDEKNKSLASLDEMSQSLRVRLVAAEELRKAAEQEKLEKEESARKDLAEQEAIMERVVQESTRLQLEAEENSKLREFLIDRGQVVDMLQGEISVIFQDIRILKAKFDANLPLSKSFTSSQTSCILASSGSSHKSLATDAGSYHSDSSEVLKTKSASSIGELSSESGNKEESAKTEHKAPLDDEWDFIIAEV 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1356 1107 Coils Coil 931 983 - -
Lele08g1356 1107 Gene3D - 221 344 IPR046342 -
Lele08g1356 1107 Coils Coil 899 919 - -
Lele08g1356 1107 Pfam Cyclin M transmembrane N-terminal domain 63 223 IPR002550 -
Lele08g1356 1107 Coils Coil 839 862 - -
Lele08g1356 1107 MobiDBLite consensus disorder prediction 1051 1095 - -
Lele08g1356 1107 Gene3D - 345 423 IPR046342 -
Lele08g1356 1107 CDD CBS_pair_CorC_HlyC_assoc 225 326 IPR044751 -
Lele08g1356 1107 SUPERFAMILY CBS-domain pair 225 417 IPR046342 -
Lele08g1356 1107 PANTHER METAL TRANSPORTER CNNM 42 461 IPR045095 GO:0010960
Lele08g1356 1107 CDD CUE 513 544 - -
Lele08g1356 1107 ProSiteProfiles CNNM transmembrane domain profile. 53 234 IPR002550 -
Lele08g1356 1107 ProSiteProfiles CUE domain profile. 505 548 IPR003892 GO:0043130
Lele08g1356 1107 MobiDBLite consensus disorder prediction 1051 1081 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1356 Lele-ChrLele08 8658035 8667428 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1356 08 8658035 8667428 Lele13g2007 13 27396147 27396599 CCT
Lele08g1356 08 8658035 8667428 Lele14g1942 14 25725926 25726466 CCT
Lele08g1356 08 8658035 8667428 Lele15g0397 15 2284527 2284973 CCT
Lele08g1356 08 8658035 8667428 Lele16g0420 16 2270523 2270960 CCT
Lele08g1356 08 8658035 8667428 Lele08g1356 08 8658035 8667428 ECH
Lele05g1506 05 9645048 9649485 Lele08g1356 08 8658035 8667428 hybridization
Lele06g1360 06 8726819 8730470 Lele08g1356 08 8658035 8667428 hybridization